Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5X2A

Crystal structure of EGFR 696-1022 T790M/V948R in complex with SKLB(3)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004672	molecular_function	protein kinase activity
A	0004713	molecular_function	protein tyrosine kinase activity
A	0005524	molecular_function	ATP binding
A	0006468	biological_process	protein phosphorylation
B	0004672	molecular_function	protein kinase activity
B	0004713	molecular_function	protein tyrosine kinase activity
B	0005524	molecular_function	ATP binding
B	0006468	biological_process	protein phosphorylation
C	0004672	molecular_function	protein kinase activity
C	0004713	molecular_function	protein tyrosine kinase activity
C	0005524	molecular_function	ATP binding
C	0006468	biological_process	protein phosphorylation
D	0004672	molecular_function	protein kinase activity
D	0004713	molecular_function	protein tyrosine kinase activity
D	0005524	molecular_function	ATP binding
D	0006468	biological_process	protein phosphorylation

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	binding site for residue CL A 1101

Chain	Residue
A	MET793
A	PRO794
A	PHE795
A	VAL845
A	LYS846

site_id	AC2
Number of Residues	6
Details	binding site for residue EDO A 1102

Chain	Residue
A	EDO1103
B	GLY917
A	ARG932
A	ARG948
A	TRP951
A	MET952

site_id	AC3
Number of Residues	4
Details	binding site for residue EDO A 1103

Chain	Residue
A	MET945
A	ARG948
A	EDO1102
B	GLU922

site_id	AC4
Number of Residues	3
Details	binding site for residue EDO A 1104

Chain	Residue
A	ASP942
A	LYS970
A	TYR978

site_id	AC5
Number of Residues	5
Details	binding site for residue EDO A 1105

Chain	Residue
A	GLN935
A	THR940
A	ILE941
A	HOH1228
A	HOH1233

site_id	AC6
Number of Residues	5
Details	binding site for residue EDO A 1106

Chain	Residue
A	TYR801
A	ASN808
A	TYR813
A	HIS988
A	HOH1217

site_id	AC7
Number of Residues	12
Details	binding site for residue 7XO A 1107

Chain	Residue
A	ALA743
A	LYS745
A	MET790
A	MET793
A	PRO794
A	GLY796
A	ASP855
A	ANP1108
A	MG1109
A	HOH1208
A	HOH1279
A	HOH1390

site_id	AC8
Number of Residues	14
Details	binding site for residue ANP A 1108

Chain	Residue
A	GLY719
A	SER720
A	GLY721
A	ALA722
A	VAL726
A	LYS745
A	ASP837
A	ARG841
A	ASN842
A	ASP855
A	7XO1107
A	MG1109
A	HOH1314
A	HOH1323

site_id	AC9
Number of Residues	5
Details	binding site for residue MG A 1109

Chain	Residue
A	ARG841
A	ASN842
A	THR854
A	7XO1107
A	ANP1108

site_id	AD1
Number of Residues	4
Details	binding site for residue EDO B 1101

Chain	Residue
B	ARG932
B	ARG948
B	TRP951
B	HOH1305

site_id	AD2
Number of Residues	3
Details	binding site for residue EDO B 1102

Chain	Residue
A	LYS929
B	ASP916
B	GLY917

site_id	AD3
Number of Residues	5
Details	binding site for residue EDO B 1103

Chain	Residue
B	MET945
B	ARG948
B	HOH1301
B	HOH1393
C	GLU931

site_id	AD4
Number of Residues	7
Details	binding site for residue EDO B 1104

Chain	Residue
B	TYR801
B	HIS805
B	ASN808
B	TYR813
B	HOH1204
B	HOH1210
B	HOH1223

site_id	AD5
Number of Residues	5
Details	binding site for residue 7XO B 1105

Chain	Residue
B	MET793
B	PRO794
B	GLY796
B	ANP1106
B	HOH1429

site_id	AD6
Number of Residues	22
Details	binding site for residue ANP B 1106

Chain	Residue
B	MG1107
B	HOH1214
B	HOH1225
B	HOH1315
B	HOH1332
B	HOH1395
B	GLY719
B	GLY721
B	ALA722
B	GLY724
B	VAL726
B	ALA743
B	LYS745
B	GLN791
B	MET793
B	CYS797
B	ASP837
B	ARG841
B	ASN842
B	LEU844
B	ASP855
B	7XO1105

site_id	AD7
Number of Residues	4
Details	binding site for residue MG B 1107

Chain	Residue
B	ARG841
B	ASN842
B	THR854
B	ANP1106

site_id	AD8
Number of Residues	4
Details	binding site for residue EDO C 1101

Chain	Residue
C	PRO937
C	VAL980
C	HOH1207
C	HOH1274

site_id	AD9
Number of Residues	4
Details	binding site for residue EDO C 1102

Chain	Residue
C	TYR801
C	ASN808
C	TYR813
C	HOH1355

site_id	AE1
Number of Residues	3
Details	binding site for residue EDO C 1103

Chain	Residue
C	ARG932
C	ARG948
C	TRP951

site_id	AE2
Number of Residues	14
Details	binding site for residue 7XO C 1104

Chain	Residue
A	ARG962
A	HOH1317
C	VAL726
C	ALA743
C	LYS745
C	MET790
C	GLN791
C	MET793
C	PRO794
C	GLY796
C	LEU844
C	ASP855
C	HOH1283
C	HOH1338

site_id	AE3
Number of Residues	5
Details	binding site for residue MG D 1101

Chain	Residue
D	LYS745
D	ASP855
D	ANP1102
D	MG1103
D	HOH1289

site_id	AE4
Number of Residues	22
Details	binding site for residue ANP D 1102

Chain	Residue
D	SER720
D	GLY721
D	ALA722
D	GLY724
D	VAL726
D	ALA743
D	LYS745
D	MET790
D	GLN791
D	MET793
D	CYS797
D	ASP837
D	ARG841
D	ASN842
D	LEU844
D	ASP855
D	MG1101
D	MG1103
D	HOH1273
D	HOH1289
D	HOH1309
D	HOH1334

site_id	AE5
Number of Residues	4
Details	binding site for residue MG D 1103

Chain	Residue
D	ASN842
D	ASP855
D	MG1101
D	ANP1102

Functional Information from PROSITE/UniProt

site_id	PS00107
Number of Residues	28
Details	PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGSGAFGTVYkGlwipegekvkip......VAIK

Chain	Residue	Details
A	LEU718-LYS745

site_id	PS00109
Number of Residues	13
Details	PROTEIN_KINASE_TYR Tyrosine protein kinases specific active-site signature. LVHrDLAARNVLV

Chain	Residue	Details
A	LEU833-VAL845

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	Active site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10028","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	32
Details	Binding site: {"evidences":[{"source":"PubMed","id":"19563760","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2GS7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3GT8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4ZSE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5CNN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5CNO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5D41","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PubMed","id":"17349580","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19563760","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2EB3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2GS7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ITN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3GT8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3VJN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3VJO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4RIW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4RIY","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4ZSE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5CNN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5CNO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5D41","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PubMed","id":"17349580","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19563760","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2EB3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2GS7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ITN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ITV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ITX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3GT8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3VJN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3VJO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4RIW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4RIX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4RIY","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4ZSE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5CNN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5CNO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5D41","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PubMed","id":"17349580","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19563760","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2EB3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2GS7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ITN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ITV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ITX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3GT8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3VJN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4RIW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4RIX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4RIY","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4ZSE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5CNN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5CNO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5D41","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	4
Details	Modified residue: {"description":"N6-(2-hydroxyisobutyryl)lysine","evidences":[{"source":"PubMed","id":"29192674","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"16083266","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"24275569","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI9
Number of Residues	4
Details	Modified residue: {"description":"Phosphotyrosine; by autocatalysis","evidences":[{"source":"PubMed","id":"19563760","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI10
Number of Residues	13
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"16543144","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"33996800","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	12
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"16543144","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI12
Number of Residues	8
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"33996800","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI13
Number of Residues	267
Details	Domain: {"description":"Protein kinase","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI14
Number of Residues	1
Details	Site: {"description":"Important for interaction with PIK3C2B"}

Chain

Residue

Details

site_id	SWS_FT_FI15
Number of Residues	1
Details	Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"23774213","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI16
Number of Residues	1
Details	Modified residue: {"description":"Phosphotyrosine; by autocatalysis","evidences":[{"source":"PubMed","id":"19563760","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23774213","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)