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5FPB

Crystal structure of human KDM4D in complex with 2-1H-pyrazol-4-yloxy- 3H,4H-pyrido-3,4-d-pyrimidin-4-one

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 350
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO A 360
ChainResidue
AHOH2335
AHIS192
AGLU194
AHIS280
AHA61341
AHOH2330

site_idAC3
Number of Residues16
DetailsBINDING SITE FOR RESIDUE HA6 A 1341
ChainResidue
AHIS90
ATYR136
AALA138
ATYR181
ATHR188
APHE189
AHIS192
ALYS210
ATRP212
ALYS245
AHIS280
ACO360
AHOH2194
AHOH2199
AHOH2330
AHOH2335

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 1342
ChainResidue
ATYR179
ATYR181
AGLU194
AALA292
AASN294
AHOH2431
AHOH2468
AHOH2469

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 1343
ChainResidue
AARG60
AGLU61
ATHR62
AASN65
AHOH2151
AHOH2153
AHOH2161
AHOH2312

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1344
ChainResidue
AARG123
ALYS124
ALYS127
AASN128
AHOH2261

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1345
ChainResidue
APRO113
ALYS124
AASN128
ATRP185
ALYS186
AHOH2261
AHOH2268

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1346
ChainResidue
AARG102
AHIS103
AASN106
AHOH2215
AHOH2471

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1347
ChainResidue
AGLN116
AGLN116
AASN117
AASN117

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1348
ChainResidue
AASP302
ATYR303
AMET306

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

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PDB entries from 2024-04-24

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