7VDS
The structure of cyclin-dependent kinase 5 (CDK5) in complex with p25 and Compound 24
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-D |
| Synchrotron site | APS |
| Beamline | 21-ID-D |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2020-02-29 |
| Detector | DECTRIS EIGER X 9M |
| Wavelength(s) | 1.12713 |
| Spacegroup name | P 32 2 1 |
| Unit cell lengths | 118.060, 118.060, 153.690 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 48.510 - 3.050 |
| R-factor | 0.2279 |
| Rwork | 0.225 |
| R-free | 0.27150 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3o0g |
| RMSD bond length | 0.003 |
| RMSD bond angle | 1.244 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 48.510 | 48.510 | 3.260 |
| High resolution limit [Å] | 3.050 | 8.630 | 3.050 |
| Rmerge | 0.144 | 0.054 | 2.565 |
| Rmeas | 0.149 | 0.055 | 2.636 |
| Rpim | 0.035 | 0.013 | 0.605 |
| Total number of observations | 437075 | 19668 | 80029 |
| Number of reflections | 24161 | 1177 | 4308 |
| <I/σ(I)> | 14.3 | 44.7 | 1.4 |
| Completeness [%] | 100.0 | 99.4 | 100 |
| Redundancy | 18.1 | 16.7 | 18.6 |
| CC(1/2) | 0.999 | 0.999 | 0.565 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 291 | 0.1M MES pH 5.5, 0.3M MgCl2, 20% PEG3350 |
