6WGH
Crystal structure of GDP-bound NRAS with ten residues long internal tandem duplication in the switch II region
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97911 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 40.460, 45.960, 89.080 |
Unit cell angles | 90.00, 99.77, 90.00 |
Refinement procedure
Resolution | 43.890 - 1.650 |
R-factor | 0.1793 |
Rwork | 0.178 |
R-free | 0.20900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3con |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.890 | 43.890 | 1.690 |
High resolution limit [Å] | 1.650 | 7.380 | 1.650 |
Rmerge | 0.099 | 0.052 | 0.787 |
Rmeas | 0.108 | 0.056 | 0.857 |
Total number of observations | 254986 | ||
Number of reflections | 38763 | 482 | 2863 |
<I/σ(I)> | 11.24 | 23.99 | 2.37 |
Completeness [%] | 99.2 | 99.8 | 99 |
Redundancy | 6.578 | 6.471 | 6.567 |
CC(1/2) | 0.997 | 0.998 | 0.738 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 0.1 M Na Citrate pH 5.0, 15% PEG 4000 and 0.1 M MgCl2 |