5ZQU
Crystal structure of tetrameric RXRalpha-LBD complexed with partial agonist CBt-PMN
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2017-12-19 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 46.571, 100.492, 111.010 |
Unit cell angles | 90.00, 99.27, 90.00 |
Refinement procedure
Resolution | 36.520 - 2.600 |
R-factor | 0.224430268151 |
Rwork | 0.222 |
R-free | 0.26964 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4n8r |
RMSD bond length | 0.006 |
RMSD bond angle | 0.791 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.760 |
High resolution limit [Å] | 2.600 | 2.600 |
Number of reflections | 31000 | 4927 |
<I/σ(I)> | 9.9 | 1.5 |
Completeness [%] | 99.6 | |
Redundancy | 3.7 | |
CC(1/2) | 0.997 | 0.667 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 200mM sodium bromide, 20% polyethylene glycol 3350 |