5DA3
Crystal structure of PTK6 Kinase domain with inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2015-06-04 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.54179 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 90.372, 48.403, 71.924 |
Unit cell angles | 90.00, 105.14, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.700 |
R-factor | 0.1991 |
Rwork | 0.197 |
R-free | 0.23020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5d7v |
RMSD bond length | 0.009 |
RMSD bond angle | 1.274 |
Data scaling software | HKL-2000 |
Refinement software | REFMAC (5.2.0005) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.760 |
High resolution limit [Å] | 1.700 | 3.660 | 1.700 |
Rmerge | 0.067 | 0.054 | 0.396 |
Rmeas | 0.073 | 0.058 | 0.466 |
Rpim | 0.027 | 0.021 | 0.238 |
Total number of observations | 207286 | ||
Number of reflections | 33176 | ||
<I/σ(I)> | 15.5 | ||
Completeness [%] | 91.7 | 98.6 | 63.1 |
Redundancy | 6.8 | 7.3 | 2.8 |
CC(1/2) | 0.997 | 0.816 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 0.2 M tri-Lithium citrate, 20% (w/v) PEG 3350 |