5ZMD
Crystal structure of FTO in complex with m6dA modified ssDNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 180 |
Detector technology | CCD |
Collection date | 2017-04-16 |
Detector | BRUKER SMART 6500 |
Wavelength(s) | 0.9765 |
Spacegroup name | I 21 21 21 |
Unit cell lengths | 122.736, 160.033, 276.756 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.170 - 3.300 |
R-factor | 0.272 |
Rwork | 0.271 |
R-free | 0.29200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lfm |
RMSD bond length | 0.021 |
RMSD bond angle | 2.097 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.420 |
High resolution limit [Å] | 3.300 | 3.300 |
Rmerge | 0.292 | 2.017 |
Rpim | 0.811 | |
Number of reflections | 41219 | |
<I/σ(I)> | 7.9 | 1.1 |
Completeness [%] | 99.9 | 100 |
Redundancy | 7 | 7.1 |
CC(1/2) | 0.852 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 273 | 20% PEG 3350, pH 7.0 |