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Updated PDB entries
9DEZ
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BU of 9dez by Molmil
PDCoV S trimer bound by three copies of PD41 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PALMITOLEIC ACID, ...
Authors:Asarnow, D, Rexhepaj, M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
Deposit date:2024-08-29
Release date:2024-11-13
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Isolation and escape mapping of broadly neutralizing antibodies against emerging delta-coronaviruses.
Immunity, 57, 2024
9DF0
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BU of 9df0 by Molmil
PDCoV S RBD bound to PD41 Fab (local refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PD41 Fab variable heavy-chain, PD41 Fab variable light-chain, ...
Authors:Asarnow, D, Rexhepaj, M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
Deposit date:2024-08-29
Release date:2024-11-13
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Isolation and escape mapping of broadly neutralizing antibodies against emerging delta-coronaviruses.
Immunity, 57, 2024
9DWY
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BU of 9dwy by Molmil
Cryo-EM structure of human MCT8 in complex with thyroid hormone T3
Descriptor: 3,5,3'TRIIODOTHYRONINE, Monocarboxylate transporter 8
Authors:Ge, Y, Dou, T, Jiang, J, Huang, P.
Deposit date:2024-10-10
Release date:2025-07-16
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural insights into brain thyroid hormone transport via MCT8 and OATP1C1.
Cell, 2025
9DXO
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BU of 9dxo by Molmil
Cryo-EM structure of human OATP1C1 F240A mutant in complex with estrone 3-sulfate
Descriptor: Solute carrier organic anion transporter family member 1C1, estrone 3-sulfate
Authors:Ge, Y, Yadav, G.P, Jiang, J, Huang, P.
Deposit date:2024-10-11
Release date:2025-07-16
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural insights into brain thyroid hormone transport via MCT8 and OATP1C1.
Cell, 2025
9DXP
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BU of 9dxp by Molmil
Cryo-EM structure of human OATP1C1 in complex with thyroid hormone T4
Descriptor: 3,5,3',5'-TETRAIODO-L-THYRONINE, CHOLESTEROL HEMISUCCINATE, Solute carrier organic anion transporter family member 1C1
Authors:Ge, Y, Dou, T, Jiang, J, Huang, P.
Deposit date:2024-10-11
Release date:2025-07-16
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Structural insights into brain thyroid hormone transport via MCT8 and OATP1C1.
Cell, 2025
9DXX
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BU of 9dxx by Molmil
Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with D-peptide
Descriptor: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kadam, R.U, Wilson, I.A.
Deposit date:2024-10-12
Release date:2025-06-25
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:De novo design of D-peptide ligands: Application to influenza virus hemagglutinin.
Proc.Natl.Acad.Sci.USA, 122, 2025
9E6Q
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BU of 9e6q by Molmil
Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
Descriptor: 23S rRNA, 50S ribosomal protein L15e, 5S rRNA, ...
Authors:Nissley, A.J, Cate, J.H.D.
Deposit date:2024-10-30
Release date:2024-11-20
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (1.95 Å)
Cite:Structure of an archaeal ribosome reveals a divergent active site and hibernation factor.
Nat Microbiol, 2025
9E71
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BU of 9e71 by Molmil
Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 50S ribosomal protein L15e, ...
Authors:Nissley, A.J, Cate, J.H.D.
Deposit date:2024-10-31
Release date:2024-11-20
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.36 Å)
Cite:Structure of an archaeal ribosome reveals a divergent active site and hibernation factor.
Nat Microbiol, 2025
9E7F
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BU of 9e7f by Molmil
Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome in complex with Dri
Descriptor: 16S rRNA, 23S rRNA, 50S ribosomal protein L15e, ...
Authors:Nissley, A.J, Cate, J.H.D.
Deposit date:2024-11-01
Release date:2024-11-20
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Structure of an archaeal ribosome reveals a divergent active site and hibernation factor.
Nat Microbiol, 2025
9ELY
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BU of 9ely by Molmil
raiA RNA motif (Clostridium acetobutylicum)
Descriptor: raiA RNA
Authors:Kretsch, R.C, Wu, Y, Nye, G, Das, R, Chiu, W.
Deposit date:2024-12-05
Release date:2025-04-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Naturally ornate RNA-only complexes revealed by cryo-EM.
Nature, 643, 2025
9F5W
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BU of 9f5w by Molmil
Human condensin II - M18BP1 complex
Descriptor: Condensin-2 complex subunit D3, Condensin-2 complex subunit G2, Condensin-2 complex subunit H2, ...
Authors:Borsellini, A, Vannini, A.
Deposit date:2024-04-30
Release date:2025-07-02
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:Condensin II activation by M18BP1.
Mol.Cell, 85, 2025
9GFK
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BU of 9gfk by Molmil
human MDM2 complex with stapled foldamer
Descriptor: E3 ubiquitin-protein ligase Mdm2, SULFATE ION, Stapled foldamer
Authors:Neuville, M, Bourgeais, M, Buratto, J, Saragaglia, C, Bo, L, Mauran, L, Varajao, L, Goudreau, S.R, Kauffmann, B, Thinon, E, Pasco, M, Khatib, A.M.
Deposit date:2024-08-09
Release date:2025-03-26
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1.841 Å)
Cite:Optimal Stapling of a Helical Peptide-Foldamer Hybrid Using a C-Terminal 4-Mercaptoproline Enhances Protein Surface Recognition and Cellular Activity.
Chemistry, 31, 2025
9GTG
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BU of 9gtg by Molmil
RIPK1 in complex with AZ"902
Descriptor: (5R)-5-[(7-chloro-1H-indol-3-yl)methyl]-3-methylimidazolidine-2,4-dione, Receptor-interacting serine/threonine-protein kinase 1, ~{N}-[[(3~{S})-1-ethanoylpyrrolidin-3-yl]methyl]-~{N}-methyl-4-quinolin-7-yl-benzenesulfonamide
Authors:Petersen, J.
Deposit date:2024-09-17
Release date:2025-07-02
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Discovery and Validation of a Novel Class of Necroptosis Inhibitors Targeting RIPK1.
Acs Chem.Biol., 20, 2025
9GTY
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BU of 9gty by Molmil
RIPK1 in complex with AZ"320
Descriptor: (5R)-5-[(7-chloro-1H-indol-3-yl)methyl]-3-methylimidazolidine-2,4-dione, 7-[4-[3-(methylsulfonylmethyl)azetidin-1-yl]sulfonylphenyl]quinoline, DIMETHYL SULFOXIDE, ...
Authors:Petersen, J.
Deposit date:2024-09-18
Release date:2025-07-16
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (2.145 Å)
Cite:Discovery and Validation of a Novel Class of Necroptosis Inhibitors Targeting RIPK1.
Acs Chem.Biol., 20, 2025
9GYD
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BU of 9gyd by Molmil
Ferredoxin Wild-type -As-isolated state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic
Authors:Carr, S.B, Wei, J, Vincent, K.A.
Deposit date:2024-10-01
Release date:2025-05-28
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 26, 2025
9GYL
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BU of 9gyl by Molmil
Ferredoxin Wild-type -Oxidised state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic, ...
Authors:Carr, S.B, Wei, J, Vincent, K.A.
Deposit date:2024-10-02
Release date:2025-05-28
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 26, 2025
9GYN
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BU of 9gyn by Molmil
Ferredoxin Wild-type - Reduced state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic
Authors:Carr, S.B, Wei, J, Vincent, K.A.
Deposit date:2024-10-02
Release date:2025-05-28
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 26, 2025
9GYR
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BU of 9gyr by Molmil
Ferredoxin CNF labelled, oxidised state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic
Authors:Carr, S.B, Wei, J, Vincent, K.A.
Deposit date:2024-10-02
Release date:2025-05-28
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 26, 2025
9GYU
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BU of 9gyu by Molmil
Ferredoxin CNF-labelled reduced state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic
Authors:Carr, S.B, Wei, J, Vincent, K.A.
Deposit date:2024-10-03
Release date:2025-05-28
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 26, 2025
9GZ0
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BU of 9gz0 by Molmil
FeFe Hydrogenase from Desulfovibrio desulfuricans labelled with cyanophenylalanine - oxidised state
Descriptor: CHLORIDE ION, IRON/SULFUR CLUSTER, LITHIUM ION, ...
Authors:Carr, S.B, Duan, Z, Rodroguez-Macia, P, Vincent, K.A.
Deposit date:2024-10-03
Release date:2025-05-28
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 26, 2025
9GZ4
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BU of 9gz4 by Molmil
FeFe Hydrogenase from Desulfovibrio desulfuricans labelled with cyanophenylalanine - reduced state
Descriptor: CHLORIDE ION, IRON/SULFUR CLUSTER, LITHIUM ION, ...
Authors:Carr, S.B, Duan, Z, Rodroguez-Macia, P, Vincent, K.A.
Deposit date:2024-10-03
Release date:2025-05-28
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 26, 2025
9GZL
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BU of 9gzl by Molmil
Apo FeFe Hydrogenase from Desulfovibrio desulfuricans labelled with cyanophenylalanine
Descriptor: CHLORIDE ION, IRON/SULFUR CLUSTER, LITHIUM ION, ...
Authors:Carr, S.B, Duan, Z, Rodriguez-Macia, P, Vincent, K.A.
Deposit date:2024-10-04
Release date:2025-05-28
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 26, 2025
9HEJ
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BU of 9hej by Molmil
Dimeric CD163 bound to human haptoglobin-haemoglobin complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Zhou, R.X, Higgins, M.K.
Deposit date:2024-11-14
Release date:2025-07-02
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Scavenger receptor CD163 multimerises to allow uptake of diverse ligands.
Nat Commun, 16, 2025
9HEK
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BU of 9hek by Molmil
Trimeric CD163 bound to human haptoglobin-haemoglobin complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Zhou, R.X, Higgins, M.K.
Deposit date:2024-11-14
Release date:2025-07-02
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Scavenger receptor CD163 multimerises to allow uptake of diverse ligands.
Nat Commun, 16, 2025
9HEL
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BU of 9hel by Molmil
Unliganded dimeric CD163 with arm-arm contacts
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Zhou, R.X, Higgins, M.K.
Deposit date:2024-11-14
Release date:2025-07-02
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Scavenger receptor CD163 multimerises to allow uptake of diverse ligands.
Nat Commun, 16, 2025

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PDB entries from 2025-07-30

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