Legacy flatfile-incompatible PDB entries

8G8P	F420-2/GTP(GDP) complex of F420-gamma glutamyl ligase (CofE) from Archaeoglobus fulgidus Descriptor: COENZYME F420, Coenzyme F420:L-glutamate ligase, GUANOSINE-5'-DIPHOSPHATE, ... Authors: Bashiri, G, Squire, C.J. Deposit date: 2023-02-18 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Poly-gamma-glutamylation of biomolecules. Nat Commun, 15, 2024
8GBS	Integrative model of the native Ana GV shell Descriptor: Gas vesicle protein C, Gas vesicle structural protein Authors: Dutka, P, Metskas, L.A, Hurt, R.C, Salahshoor, H, Wang, T.U, Malounda, D, Lu, G, Chou, T.F, Shapiro, M.G, Jensen, J.J. Deposit date: 2023-02-28 Release date: 2023-04-19 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (8 Å) Cite: Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ET. Structure, 31, 2023
8GDW	Crystal structure of Domain Related to Iron (DRI) from cyanobacteria Descriptor: Ssr1698 protein, ZINC ION Authors: Kumaran, D, Grosjean, N, Blaby, E.C. Deposit date: 2023-03-06 Release date: 2024-03-13 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (2.35 Å) Cite: A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nat Commun, 15, 2024
8GH6	Bombyx mori R2 retrotransposon initiating target-primed reverse transcription Descriptor: 28S DNA bottom strand, 3' side, 5' side (priming strand), ... Authors: Wilkinson, M.E, Zhang, F. Deposit date: 2023-03-09 Release date: 2023-04-05 Last modified: 2023-08-16 Method: ELECTRON MICROSCOPY (3.08 Å) Cite: Structure of the R2 non-LTR retrotransposon initiating target-primed reverse transcription. Science, 380, 2023
8GJ1	E. coli clamp loader with open clamp on primed template DNA (form 2) Descriptor: ADENOSINE-5'-DIPHOSPHATE, Beta sliding clamp, DNA polymerase III subunit delta, ... Authors: Oakley, A.J, Xu, Z.-Q, Dixon, N.E. Deposit date: 2023-03-14 Release date: 2024-03-27 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural characterisation of the complete cycle of sliding clamp loading in E. coli To Be Published
8GJD	X-ray crystallographic structure of a beta-hairpin peptide derived from Abeta 17-36. (ORN)LVFFAED(ORN)AII(N-Me-Gly)LMV Descriptor: Beta-hairpin peptide derived from Abeta 17-36, IODIDE ION Authors: Kreutzer, A.G, Ruttenberg, S.M, Nowick, J.S, Truex, N.L. Deposit date: 2023-03-15 Release date: 2024-01-17 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.03 Å) Cite: beta-Hairpin Alignment Alters Oligomer Formation in A beta-Derived Peptides. Biochemistry, 63, 2024
8GJM	17b10 fab in complex with full-length SARS-CoV-2 Spike G614 trimer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Kwon, H.J, Zhang, J, Kosikova, M, Tang, W.C, Rodriguez, U.O, Peng, H.Q, Meseda, C.A, Pedro, C.L, Schmeisser, F, Lu, J.M, Zhou, B, Davis, C.T, Wentworth, D.E, Chen, W.H, Shriver, M.C, Pasetti, M.F, Weir, J.P, Chen, B, Xie, H. Deposit date: 2023-03-16 Release date: 2023-04-05 Last modified: 2023-04-19 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Distinct in vitro and in vivo neutralization profiles of monoclonal antibodies elicited by the receptor binding domain of the ancestral SARS-CoV-2. J Med Virol, 95, 2023
8GL6	The Type 9 Secretion System in vitro assembled, RemA-CTD substrate bound complex Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Protein involved in gliding motility SprA, ... Authors: Deme, J.C, Lea, S.M. Deposit date: 2023-03-21 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GL8	The Type 9 Secretion System Extended Translocon - SprA-PorV-PPI-RemZ-SkpA-SprE complex Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Periplasmic chaperone for outer membrane proteins Skp, ... Authors: Deme, J.C, Lea, S.M. Deposit date: 2023-03-21 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLJ	The Type 9 Secretion System in vitro assembled, FspA-CTD substrate bound complex Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Por secretion system C-terminal sorting domain-containing protein, ... Authors: Deme, J.C, Lea, S.M. Deposit date: 2023-03-22 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLK	The Type 9 Secretion System dGldL peak II, NucA substrate bound complex Descriptor: Endonuclease I, Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, ... Authors: Deme, J.C, Lea, S.M. Deposit date: 2023-03-22 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLM	The Type 9 Secretion System in vivo assembled, RemZ substrate bound complex - conformation 1 Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Protein involved in gliding motility SprA, ... Authors: Deme, J.C, Lea, S.M. Deposit date: 2023-03-22 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLN	The Type 9 Secretion System in vivo assembled, RemZ substrate bound complex - conformation 2 Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Protein involved in gliding motility SprA, ... Authors: Deme, J.C, Lea, S.M. Deposit date: 2023-03-22 Release date: 2024-01-31 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: The Type 9 Secretion System caught in the act of transport Nat Microbiol, 2024
8GLP	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Watson, Z.L, Altman, R.B, Blanchard, S.C. Deposit date: 2023-03-22 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (1.67 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8GLT	Backbone model of de novo-designed chlorophyll-binding nanocage O32-15 Descriptor: C2-chlorophyll-comp_O32-15_ctermHis, polyalanine model, C3-comp_O32-15 Authors: Redler, R.L, Ennist, N.M, Wang, S, Baker, D, Ekiert, D.C, Bhabha, G. Deposit date: 2023-03-23 Release date: 2024-03-27 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (6.5 Å) Cite: De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nat.Chem.Biol., 20, 2024
8GLV	96-nm repeat unit of doublet microtubules from Chlamydomonas reinhardtii flagella Descriptor: 28 kDa inner dynein arm light chain, axonemal, AAA+ ATPase domain-containing protein, ... Authors: Walton, T, Brown, A. Deposit date: 2023-03-23 Release date: 2023-05-31 Last modified: 2023-06-28 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Axonemal structures reveal mechanoregulatory and disease mechanisms. Nature, 618, 2023
8GMO	Bacteriophage T4 capsid shell containing 9DE insertions into the gp23* major capsid protein subunits Descriptor: Mature capsid vertex protein, Mature major capsid protein Authors: Fokine, A, Rao, V.B. Deposit date: 2023-03-26 Release date: 2023-05-10 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Design of bacteriophage T4-based artificial viral vectors for human genome remodeling. Nat Commun, 14, 2023
8GMS	Structure of LexA in complex with RecA filament Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), LexA repressor, MAGNESIUM ION, ... Authors: Gao, B, Feng, Y. Deposit date: 2022-08-22 Release date: 2022-12-21 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.31 Å) Cite: Structural basis for regulation of SOS response in bacteria. Proc.Natl.Acad.Sci.USA, 120, 2023
8GPI	HIV-1 Env X18 UFO in complex with 8ANC195 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 8ANC195 Fab heavy chain, ... Authors: Niu, J, Xu, Y.W, Yang, B. Deposit date: 2022-08-26 Release date: 2023-08-09 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structures and immune recognition of Env trimers from two Asia prevalent HIV-1 CRFs. Nat Commun, 14, 2023
8GPK	Crystal structure of human anti-HIV-1 broadly neutralizing antibody F6 Fab Descriptor: F6 Fab heavy Chain, F6 Fab light chain Authors: Niu, J, Yang, B. Deposit date: 2022-08-26 Release date: 2023-08-09 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.34 Å) Cite: Structures and immune recognition of Env trimers from two Asia prevalent HIV-1 CRFs. Nat Commun, 14, 2023
8GPU	YFV_E_YD6Fab_prefusion Descriptor: Envelope protein, YD6Fab_H, YD6Fab_L Authors: Li, Y, Wu, L, Qi, J, Yan, J, Gao, G.F. Deposit date: 2022-08-27 Release date: 2022-11-02 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.79 Å) Cite: A neutralizing-protective supersite of human monoclonal antibodies for yellow fever virus. Innovation (N Y), 3, 2022
8GQJ	Structure of Thiolase from Pseudomonas aeruginosa PAO1 Descriptor: GLYCEROL, NONAETHYLENE GLYCOL, TRIETHYLENE GLYCOL, ... Authors: Hong, J, Son, H.F, Kim, K.J. Deposit date: 2022-08-30 Release date: 2024-03-13 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Structure of thiolase from Pseudomonas aeruginosa PAO1 To Be Published
8GRA	Structure of Type VI secretion system cargo delivery vehicle Hcp-VgrG-PAAR Descriptor: Bacterodales T6SS protein TssD (Hcp), Type VI secretion system spike protein Paar, Type VI secretion system spike protein VgrG Authors: Wen, Y, He, W, Zhu, L. Deposit date: 2022-09-01 Release date: 2023-07-12 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structure and assembly of type VI secretion system cargo delivery vehicle. Cell Rep, 42, 2023
8GTB	Cryo-EM structure of the marine siphophage vB_DshS-R4C tail tube protein Descriptor: Major tail protein Authors: Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N. Deposit date: 2022-09-08 Release date: 2023-07-12 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.43 Å) Cite: Structure and proposed DNA delivery mechanism of a marine roseophage. Nat Commun, 14, 2023
8GTC	Cryo-EM model of the marine siphophage vB_DshS-R4C baseplate-tail complex Descriptor: Distal tail protein, Hub protein, Major tail protein, ... Authors: Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N. Deposit date: 2022-09-08 Release date: 2023-07-12 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structure and proposed DNA delivery mechanism of a marine roseophage. Nat Commun, 14, 2023

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