Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB形式変換不可の PDB エントリー
6YXX
DownloadVisualize
BU of 6yxx by Molmil
State A of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate
分子名称: 12S ribosomal RNA, 50S ribosomal protein L13, putative, ...
著者Jaskolowski, M, Ramrath, D.J.F, Bieri, P, Niemann, M, Mattei, S, Calderaro, S, Leibundgut, M.A, Horn, E.K, Boehringer, D, Schneider, A, Ban, N.
登録日2020-05-04
公開日2020-10-14
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural Insights into the Mechanism of Mitoribosomal Large Subunit Biogenesis.
Mol.Cell, 79, 2020
6YXY
DownloadVisualize
BU of 6yxy by Molmil
State B of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate
分子名称: 12S ribosomal RNA, ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Jaskolowski, M, Ramrath, D.J.F, Bieri, P, Niemann, M, Mattei, S, Calderaro, S, Leibundgut, M.A, Horn, E.K, Boehringer, D, Schneider, A, Ban, N.
登録日2020-05-04
公開日2020-10-14
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural Insights into the Mechanism of Mitoribosomal Large Subunit Biogenesis.
Mol.Cell, 79, 2020
6YXZ
DownloadVisualize
BU of 6yxz by Molmil
Structure and activity of the GH20 beta-N-beta-N-acetylhexosaminidase from Bifidobacterium bifidum
分子名称: Beta-N-acetylhexosaminidase, CHLORIDE ION, GLYCEROL, ...
著者He, Y, Jin, Y.
登録日2020-05-04
公開日2021-05-12
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structure and activity of the GH20 beta-N-beta-N-acetylhexosaminidase from Bifidobacterium bifidum
To Be Published
6YY5
DownloadVisualize
BU of 6yy5 by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) in complex with TCV_L5
分子名称: FE (III) ION, Ferric enterobactin receptor, ~{N}-[2-[[(2~{S})-3-[[(2~{S})-3-[[1-[2-[2-[2-[4-[4-[5-(acetamidomethyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]-2-fluoranyl-phenyl]piperazin-1-yl]-2-oxidanylidene-ethoxy]ethoxy]ethyl]-1,2,3-triazol-4-yl]methylamino]-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-oxidanylidene-propyl]amino]-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-oxidanylidene-propyl]amino]-2-oxidanylidene-ethyl]-2,3-bis(oxidanyl)benzamide
著者Naismith, J.H, Moynie, L.M.
登録日2020-05-04
公開日2020-07-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.717 Å)
主引用文献Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
6YYN
DownloadVisualize
BU of 6yyn by Molmil
Structure of Cathepsin S in complex with Compound 14
分子名称: CITRATE ANION, Cathepsin S, SULFATE ION, ...
著者Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
登録日2020-05-05
公開日2021-05-12
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
6YYO
DownloadVisualize
BU of 6yyo by Molmil
Structure of Cathepsin S in complex with Compound 1
分子名称: 1,2-ETHANEDIOL, 6-(4-methylsulfonylpiperazin-1-yl)-[1,2,4]triazolo[4,3-b]pyridazine, CITRATE ANION, ...
著者Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
登録日2020-05-05
公開日2021-05-12
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
6YYP
DownloadVisualize
BU of 6yyp by Molmil
Structure of Cathepsin S in complex with Compound 2
分子名称: 1-(furan-2-ylmethyl)-5-(trifluoromethyl)benzimidazol-2-amine, ACETATE ION, Cathepsin S, ...
著者Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
登録日2020-05-05
公開日2021-05-12
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
6YYQ
DownloadVisualize
BU of 6yyq by Molmil
Structure of Cathepsin S in complex with Compound 3
分子名称: (6~{R})-2-phenyl-5,6,7,8-tetrahydroquinazolin-6-amine, Cathepsin S
著者Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
登録日2020-05-05
公開日2021-05-12
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
6YYR
DownloadVisualize
BU of 6yyr by Molmil
Structure of Cathepsin S in complex with Compound 20b
分子名称: (2~{R})-~{N}-(2-azanylideneethyl)-2-[2-(3-methyl-1,2-oxazol-5-yl)ethanoylamino]-3-(4-pyridin-2-ylpiperazin-1-yl)sulfonyl-propanamide, 1,2-ETHANEDIOL, CITRATE ANION, ...
著者Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
登録日2020-05-05
公開日2021-05-12
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
6YZ3
DownloadVisualize
BU of 6yz3 by Molmil
PqsR (MvfR) in complex with antagonist 19
分子名称: 1,2-ETHANEDIOL, 6-chloranyl-3-[(2-hexyl-2,3-dihydro-1,3-thiazol-4-yl)methyl]quinazolin-4-one, LysR family transcriptional regulator
著者Richardson, W.K, Emsley, J.
登録日2020-05-06
公開日2020-09-16
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Novel quinazolinone inhibitors of the Pseudomonas aeruginosa quorum sensing transcriptional regulator PqsR.
Eur.J.Med.Chem., 208, 2020
6YZ7
DownloadVisualize
BU of 6yz7 by Molmil
H11-D4, SARS-CoV-2 RBD, CR3022 ternary complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody Cr3022, Antibody light chain, ...
著者Naismith, J.H, Ren, J, Zhou, D, Zhao, Y, Stuart, D.I.
登録日2020-05-06
公開日2020-06-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural characterisation of a nanobody derived from a naive library that neutralises SARS-CoV-2
To Be Published, 2020
6YZD
DownloadVisualize
BU of 6yzd by Molmil
Crystal structure of the M295A variant of Ssl1
分子名称: COPPER (II) ION, Copper oxidase, SULFATE ION
著者Mielenbrink, S, Olbrich, A, Urlacher, V, Span, I.
登録日2020-05-06
公開日2021-05-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Effect of the axial ligand mutation on spectral and structural properties of Ssl1 laccase
To Be Published
6YZF
DownloadVisualize
BU of 6yzf by Molmil
Crystal structure of the M295Y variant of Ssl1
分子名称: COPPER (II) ION, Copper oxidase, GLU-HIS-SER, ...
著者Mielenbrink, S, Olbrich, A, Urlacher, V, Span, I.
登録日2020-05-06
公開日2021-05-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.684 Å)
主引用文献Effect of the axial ligand mutation on spectral and structural properties of Ssl1 laccase
To Be Published
6YZY
DownloadVisualize
BU of 6yzy by Molmil
Crystal structure of the M295V variant of Ssl1
分子名称: COPPER (II) ION, Copper oxidase, SULFATE ION
著者Mielenbrink, S, Olbrich, A, Urlacher, V, Span, I.
登録日2020-05-07
公開日2021-05-19
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.282 Å)
主引用文献Effect of the axial ligand mutation on spectral and structural properties of Ssl1 laccase
To Be Published
6Z07
DownloadVisualize
BU of 6z07 by Molmil
PqsR (MvfR) in complex with antagonist 12
分子名称: 3-[(2-~{tert}-butyl-1,3-thiazol-4-yl)methyl]-6-chloranyl-quinazolin-4-one, GLYCEROL, Transcriptional regulator MvfR
著者Richardson, W.K, Emsley, J.
登録日2020-05-07
公開日2020-09-16
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Novel quinazolinone inhibitors of the Pseudomonas aeruginosa quorum sensing transcriptional regulator PqsR.
Eur.J.Med.Chem., 208, 2020
6Z0U
DownloadVisualize
BU of 6z0u by Molmil
CryoEM structure of the Chikungunya virus nsP1 complex
分子名称: Polyprotein P1234, ZINC ION
著者Reguera, J, Jones, R, Arranz-Avila, R.
登録日2020-05-11
公開日2020-10-14
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Capping pores of alphavirus nsP1 gate membranous viral replication factories.
Nature, 589, 2021
6Z14
DownloadVisualize
BU of 6z14 by Molmil
Structure of Bifidobacterium bifidum GH20 beta-N-beta-N-acetylhexosaminidase E553Q variant in complex with 4MU-6SGlcNAc-derived oxazoline
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-N-acetylhexosaminidase, NITRATE ION, ...
著者He, Y, Jin, Y, Rizkallah, P, Chen, P.
登録日2020-05-12
公開日2021-05-19
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Structure and activity of the GH20 beta-N-beta-N-acetylhexosaminidase from Bifidobacterium bifidum
To Be Published
6Z17
DownloadVisualize
BU of 6z17 by Molmil
PqsR (MvfR) in complex with antagonist 6
分子名称: 6-chloranyl-3-[(2-propan-2-yl-2,3-dihydro-1,3-thiazol-4-yl)methyl]quinazolin-4-one, Transcriptional regulator MvfR
著者Richardson, W.K, Emsley, J.
登録日2020-05-12
公開日2020-09-16
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Novel quinazolinone inhibitors of the Pseudomonas aeruginosa quorum sensing transcriptional regulator PqsR.
Eur.J.Med.Chem., 208, 2020
6Z1P
DownloadVisualize
BU of 6z1p by Molmil
Structure of the mitochondrial ribosome from Tetrahymena thermophila
分子名称: 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, ...
著者Tobiasson, V, Amunts, A.
登録日2020-05-14
公開日2020-06-24
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation.
Elife, 9, 2020
6Z1Q
DownloadVisualize
BU of 6z1q by Molmil
MAP3K14 (NIK) in complex with DesF-3R/4076
分子名称: DesF-3R/4076, Mitogen-activated protein kinase kinase kinase 14
著者Jacoby, E, van Vlijmen, H, Querolle, O, Stansfield, I, Meerpoel, L, Versele, M, Hynd, G, Attar, R.
登録日2020-05-14
公開日2020-07-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献FEP+ calculations predict a stereochemical SAR switch for first-in-class indoline NIK inhibitors for multiple myeloma
Future Drug Discov, 2, 2020
6Z1T
DownloadVisualize
BU of 6z1t by Molmil
MAP3K14 (NIK) in complex with 4S/3694
分子名称: 4S/3694, Mitogen-activated protein kinase kinase kinase 14
著者Jacoby, E, van Vlijmen, H, Querolle, O, Stansfield, I, Meerpoel, L, Versele, M, Hynd, G, Attar, R.
登録日2020-05-14
公開日2020-07-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献FEP+ calculations predict a stereochemical SAR switch for first-in-class indoline NIK inhibitors for multiple myeloma
Future Drug Discov, 2, 2020
6Z2E
DownloadVisualize
BU of 6z2e by Molmil
Crystal structure of SARS-CoV-2 Mpro in complex with the activity-based probe, biotin-PEG(4)-Abu-Tle-Leu-Gln-vinylsulfone
分子名称: (4~{S})-4-[[(2~{S})-2-[[(2~{S})-2-[[(2~{S})-2-[3-[2-[2-[2-[2-[5-[(3~{a}~{S},4~{R},6~{a}~{R})-2-oxidanylidene-3,3~{a},4,6~{a}-tetrahydro-1~{H}-thieno[3,4-d]imidazol-4-yl]pentanoylamino]ethoxy]ethoxy]ethoxy]ethoxy]propanoylamino]butanoyl]amino]-3,3-dimethyl-butanoyl]amino]-4-methyl-pentanoyl]amino]-6-methylsulfonyl-hexanamide, 3C-like proteinase, CHLORIDE ION, ...
著者Zhang, L, Hilgenfeld, R.
登録日2020-05-15
公開日2020-06-17
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of SARS-CoV-2 Mpro in complex with the activity-based probe, biotin-PEG(4)-Abu-Tle-Leu-Gln-vinylsulfone
To Be Published
6Z2N
DownloadVisualize
BU of 6z2n by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) in complex with BCV-L6
分子名称: 1,2-ETHANEDIOL, BCV-L6, FE (III) ION, ...
著者Naismith, J.H, Moynie, L.M.
登録日2020-05-18
公開日2021-01-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.029 Å)
主引用文献Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
6Z33
DownloadVisualize
BU of 6z33 by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) in complex with BCV
分子名称: 1,2-ETHANEDIOL, FE (III) ION, Ferric enterobactin receptor, ...
著者Naismith, J.H, Moynie, L.M.
登録日2020-05-19
公開日2020-07-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.711 Å)
主引用文献Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
6Z39
DownloadVisualize
BU of 6z39 by Molmil
Structure of recombinant human beta-glucocerebrosidase in complex with BODIPY functionalised epoxide activity based probe
分子名称: (1~{S},2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[4-[4-[(12~{R})-2,2-bis(fluoranyl)-4,6,10,12-tetramethyl-1,3-diaza-2$l^{4}-boratricyclo[7.3.0.0^{3,7}]dodeca-4,6,9-trien-8-yl]butyl]-1,2,3-triazol-1-yl]methyl]-7-oxabicyclo[4.1.0]heptane-2,3,4-triol, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Rowland, R.J, Davies, G.J.
登録日2020-05-19
公開日2021-06-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Design, Synthesis and Structural Analysis of Glucocerebrosidase Imaging Agents.
Chemistry, 27, 2021

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon