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PDB形式変換不可の PDB エントリー
6QZA
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BU of 6qza by Molmil
HLA-DR1 with GMF Influenza PB1 Peptide
分子名称: HLA class II histocompatibility antigen, DR alpha chain, DRB1-1 beta chain, ...
著者Greenshields-Watson, A, Rizkallah, P.J.
登録日2019-03-11
公開日2020-07-15
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.09 Å)
主引用文献CD4+T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features.
Cell Rep, 32, 2020
6QZC
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BU of 6qzc by Molmil
HLA-DR1 with the QAR Peptide
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Greenshields-Watson, A, Rizkallah, P.J.
登録日2019-03-11
公開日2020-07-15
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献CD4+T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features.
Cell Rep, 32, 2020
6QZD
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BU of 6qzd by Molmil
HLA-DR1 with SGP Influenza Matrix Peptide
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Greenshields-Watson, A, Rizkallah, P.J.
登録日2019-03-11
公開日2020-07-15
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献CD4+T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features.
Cell Rep, 32, 2020
6QZF
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BU of 6qzf by Molmil
The cryo-EM structure of the collar complex and tail axis in genome emptied bacteriophage phi29
分子名称: Portal protein, Pre-neck appendage protein, Proximal tail tube connector protein
著者Xu, J, Wang, D, Gui, M, Xiang, Y.
登録日2019-03-11
公開日2019-06-12
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural assembly of the tailed bacteriophage φ29.
Nat Commun, 10, 2019
6QZP
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BU of 6qzp by Molmil
High-resolution cryo-EM structure of the human 80S ribosome
分子名称: (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 18S rRNA (1740-MER), 28S rRNA (3773-MER), ...
著者Natchiar, S.K, Myasnikov, A.G, Kratzat, H, Hazemann, I, Klaholz, B.P.
登録日2019-03-12
公開日2019-04-24
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Visualization of chemical modifications in the human 80S ribosome structure.
Nature, 551, 2017
6R0E
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BU of 6r0e by Molmil
Structure of F11TCR in complex with DR1 MHC Class II presenting PKYVKQNTLKLAT
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, F11-TCR Alpha Chain, ...
著者Rizkallah, P.J, Greenshields-Watson, A.L.
登録日2019-03-12
公開日2020-07-15
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献CD4+T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features.
Cell Rep, 32, 2020
6R21
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BU of 6r21 by Molmil
Cryo-EM structure of T7 bacteriophage fiberless tail complex
分子名称: Portal protein, Tail tubular protein gp11, Tail tubular protein gp12
著者Cuervo, A, Fabrega-Ferrer, M, Machon, C, Conesa, J.J, Perez-Ruiz, M, Coll, M, Carrascosa, J.L.
登録日2019-03-15
公開日2019-09-04
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.33 Å)
主引用文献Structures of T7 bacteriophage portal and tail suggest a viral DNA retention and ejection mechanism.
Nat Commun, 10, 2019
6R5Q
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BU of 6r5q by Molmil
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Shanmuganathan, V, Cheng, J, Berninghausen, O, Beckmann, R.
登録日2019-03-25
公開日2019-07-10
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural and mutational analysis of the ribosome-arresting human XBP1u.
Elife, 8, 2019
6R61
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BU of 6r61 by Molmil
Major aspartyl peptidase 1 from C. neoformans in complex with Inhibitor LP258
分子名称: (3~{S},7~{S},8~{S})-7-oxidanyl-8-(phenylmethyl)-3-(pyridin-3-ylmethyl)-1,4,9-triazacyclotricosane-2,5,10-trione, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
著者Krystufek, R, Sacha, P, Brynda, J, Konvalinka, J.
登録日2019-03-26
公開日2021-04-07
最終更新日2025-03-26
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Major aspartyl peptidase 1 from C. neoformans in complex with Inhibitor LP258
To Be Published
6R6G
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BU of 6r6g by Molmil
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Shanmuganathan, V, Cheng, J, Braunger, K, Berninghausen, O, Beatrix, B, Beckmann, R.
登録日2019-03-27
公開日2019-07-10
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural and mutational analysis of the ribosome-arresting human XBP1u.
Elife, 8, 2019
6R6P
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BU of 6r6p by Molmil
Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
分子名称: 18S rRNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Shanmuganathan, V, Cheng, J, Berninghausen, O, Beckmann, R.
登録日2019-03-27
公開日2019-07-10
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural and mutational analysis of the ribosome-arresting human XBP1u.
Elife, 8, 2019
6R7Q
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BU of 6r7q by Molmil
Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Shanmuganathan, V, Cheng, J, Braunger, K, Berninghausen, O, Beatrix, B, Beckmann, R.
登録日2019-03-29
公開日2019-07-10
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural and mutational analysis of the ribosome-arresting human XBP1u.
Elife, 8, 2019
6R83
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BU of 6r83 by Molmil
CryoEM structure and molecular model of squid hemocyanin (Todarodes pacificus , TpH)
分子名称: Hemocyanin subunit 1
著者Tanaka, Y, Kato, S, Stabrin, M, Raunser, S, Matsui, T, Gatsogiannis, C.
登録日2019-03-31
公開日2019-05-08
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (5.1 Å)
主引用文献Cryo-EM reveals the asymmetric assembly of squid hemocyanin.
Iucrj, 6, 2019
6R84
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BU of 6r84 by Molmil
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
分子名称: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
著者Su, T, Izawa, T, Cheng, J, Yamashita, Y, Berninghausen, O, Inada, T, Neupert, W, Beckmann, R.
登録日2019-03-31
公開日2019-06-26
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structure and function of Vms1 and Arb1 in RQC and mitochondrial proteome homeostasis.
Nature, 570, 2019
6R86
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BU of 6r86 by Molmil
Yeast Vms1-60S ribosomal subunit complex (post-state)
分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
著者Su, T, Izawa, T, Cheng, J, Yamashita, Y, Berninghausen, O, Inada, T, Neupert, W, Beckmann, R.
登録日2019-03-31
公開日2019-07-31
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure and function of Vms1 and Arb1 in RQC and mitochondrial proteome homeostasis.
Nature, 570, 2019
6R87
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BU of 6r87 by Molmil
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
分子名称: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
著者Su, T, Izawa, T, Cheng, J, Yamashita, Y, Berninghausen, O, Inada, T, Neupert, W, Beckmann, R.
登録日2019-03-31
公開日2019-06-26
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure and function of Vms1 and Arb1 in RQC and mitochondrial proteome homeostasis.
Nature, 570, 2019
6RAV
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BU of 6rav by Molmil
Complement factor B protease domain in complex with the reversible inhibitor 4-((2S,4S)-4-ethoxy-1-((5-methoxy-7-methyl-1H-indol-4-yl)methyl)piperidin-2-yl)benzoic acid
分子名称: 4-[(2~{S},4~{S})-4-ethoxy-1-[(5-methoxy-7-methyl-1~{H}-indol-4-yl)methyl]piperidin-2-yl]benzoic acid, Complement factor B, SULFATE ION, ...
著者Adams, C.M, Sellner, H, Ehara, T, Mac Sweeney, A, Crowley, M, Anderson, K, Karki, R, Mainolfi, N, Valeur, E, Sirockin, F, Gerhartz, B, Erbel, P, Hughes, N, Smith, T.M, Cumin, F, Argikar, U, Mogi, M, Sedrani, R, Wiesmann, C, Jaffee, B, Maibaum, J, Flohr, S, Harrison, R, Eder, J.
登録日2019-04-08
公開日2019-04-17
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Small-molecule factor B inhibitor for the treatment of complement-mediated diseases.
Proc.Natl.Acad.Sci.USA, 116, 2019
6RI5
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BU of 6ri5 by Molmil
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
分子名称: 25S RNA, 5.8S rRNA, 5S rRNA, ...
著者Kargas, V, Warren, A.J.
登録日2019-04-23
公開日2019-06-26
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Mechanism of completion of peptidyltransferase centre assembly in eukaryotes.
Elife, 8, 2019
6RLW
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BU of 6rlw by Molmil
Structure of the human 8-oxoguanine DNA Glycosylase hOGG1 in complex with inhibitor TH5487
分子名称: 4-(4-bromanyl-2-oxidanylidene-3~{H}-benzimidazol-1-yl)-~{N}-(4-iodophenyl)piperidine-1-carboxamide, N-glycosylase/DNA lyase
著者Masuyer, G, Stenmark, P.
登録日2019-05-03
公開日2020-07-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Targeting OGG1 arrests cancer cell proliferation by inducing replication stress.
Nucleic Acids Res., 48, 2020
6RM3
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BU of 6rm3 by Molmil
Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome
分子名称: 16S rRNA, 23S rRNA, 5S rRNA, ...
著者Barandun, J, Hunziker, M, Vossbrinck, C.R, Klinge, S.
登録日2019-05-05
公開日2019-07-10
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome.
Nat Microbiol, 4, 2019
6RQC
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BU of 6rqc by Molmil
Cryo-EM structure of an MCM loading intermediate
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA (88-MER), ...
著者Miller, T.C.R, Locke, J, Costa, A.
登録日2019-05-15
公開日2019-11-20
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Mechanism of head-to-head MCM double-hexamer formation revealed by cryo-EM.
Nature, 575, 2019
6RVV
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BU of 6rvv by Molmil
Structure of left-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.
分子名称: GOLD ION, Transcription attenuation protein MtrB
著者Malay, A.D, Miyazaki, N, Biela, A.P, Iwasaki, K, Heddle, J.G.
登録日2019-06-03
公開日2019-06-12
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献An ultra-stable gold-coordinated protein cage displaying reversible assembly.
Nature, 569, 2019
6RVW
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Structure of right-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.
分子名称: GOLD ION, Transcription attenuation protein MtrB
著者Malay, A.D, Miyazaki, N, Biela, A.P, Iwasaki, K, Heddle, J.G.
登録日2019-06-03
公開日2019-06-12
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献An ultra-stable gold-coordinated protein cage displaying reversible assembly.
Nature, 569, 2019
6RW4
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BU of 6rw4 by Molmil
Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3
分子名称: 12S mitochondrial rRNA, 28S ribosomal protein S10, mitochondrial, ...
著者Itoh, Y, Khawaja, A, Rorbach, J, Amunts, A.
登録日2019-06-03
公開日2020-06-03
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Distinct pre-initiation steps in human mitochondrial translation.
Nat Commun, 11, 2020
6RW5
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BU of 6rw5 by Molmil
Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3
分子名称: 12S mitochondrial rRNA, 28S ribosomal protein S10, mitochondrial, ...
著者Itoh, Y, Khawaja, A, Rorbach, J, Amunts, A.
登録日2019-06-03
公開日2020-06-03
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3.14 Å)
主引用文献Distinct pre-initiation steps in human mitochondrial translation.
Nat Commun, 11, 2020

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件を2025-08-20に公開中

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