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PDB形式変換不可の PDB エントリー
8YLB
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Cocrystal structures of agonists compound 1 with HsClpP
分子名称: 5-[(2-methylphenyl)methyl]-11-(phenylmethyl)-2,5,7,11-tetrazatricyclo[7.4.0.0^{2,6}]trideca-1(9),6-dien-8-one, ATP-dependent Clp protease proteolytic subunit, mitochondrial
著者Zhao, N, Zhu, Y, Bao, R.
登録日2024-03-06
公開日2024-05-15
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Rational Design of a Novel Class of Human ClpP Agonists through a Ring-Opening Strategy with Enhanced Antileukemia Activity.
J.Med.Chem., 67, 2024
8YLC
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The crystal structure of PDE4D with Amentoflavone
分子名称: 3',5'-cyclic-AMP phosphodiesterase 4D, 8-[5-[5,7-bis(oxidanyl)-4-oxidanylidene-chromen-2-yl]-2-oxidanyl-phenyl]-2-(4-hydroxyphenyl)-5,7-bis(oxidanyl)chromen-4-one, MAGNESIUM ION, ...
著者Huang, Y.-Y, Luo, H.-B.
登録日2024-03-06
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.30003722879 Å)
主引用文献Discovery of amentoflavone as a natural PDE4 inhibitor with anti-fibrotic effects
Chin.Chem.Lett., 2024
8YLS
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Structure of SARS-CoV-2 Mpro in complex with its degrader
分子名称: (4-methoxyphenyl)methyl ~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]carbamate, 3C-like proteinase nsp5
著者Feng, Y, Li, W, Cheng, S.H, Li, X.B.
登録日2024-03-06
公開日2024-09-04
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献The Main Protease Degraders: Potent Broad-Spectrum Agents for Anti-Coronavirus Agents
To Be Published
8YLT
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The structure of DSR2 and NAD+ complex
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SIR2-like domain-containing protein
著者Zheng, J, Yang, X.
登録日2024-03-06
公開日2024-08-14
実験手法ELECTRON MICROSCOPY (3.09 Å)
主引用文献Structural insights into autoinhibition and activation of defense-associated sirtuin protein.
Int.J.Biol.Macromol., 277, 2024
8YM7
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Crystal structure of Lysine Specific Demethylase 1 (LSD1) with JH-45
分子名称: 4-[5-(4-azanylpiperidin-1-yl)-8-(4-methylphenyl)pyrido[3,4-b]pyrazin-7-yl]-2-fluoranyl-benzenecarbonitrile, FLAVIN-ADENINE DINUCLEOTIDE, Lysine-specific histone demethylase 1A, ...
著者Zhiyan, D, Danyan, C, Hong, J, Tongchao, L, Bing, X.
登録日2024-03-08
公開日2024-05-22
実験手法X-RAY DIFFRACTION (2.83 Å)
主引用文献Discovery of Novel LSD1 Inhibitors for the Treatment of Autosomal Dominant Polycystic Kidney Disease
To Be Published
8YOO
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BU of 8yoo by Molmil
Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline
分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
著者Li, X, Wang, M, Denk, T, Cheng, J.
登録日2024-03-13
公開日2024-07-10
実験手法ELECTRON MICROSCOPY (2 Å)
主引用文献Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline.
Nat Commun, 15, 2024
8YOP
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Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
著者Li, X, Wang, M, Denk, T, Cheng, J.
登録日2024-03-13
公開日2024-07-10
実験手法ELECTRON MICROSCOPY (2.2 Å)
主引用文献Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline.
Nat Commun, 15, 2024
8YPK
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mouse proteasome 20S subunit in complex with compound 1
分子名称: Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
著者Kashima, A, Arai, Y.
登録日2024-03-17
公開日2024-07-31
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Optimization of alpha-amido boronic acids via cryo-electron microscopy analysis: Discovery of a novel highly selective immunoproteasome subunit LMP7 ( beta 5i)/LMP2 ( beta 1i) dual inhibitor.
Bioorg.Med.Chem., 109, 2024
8YQ8
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Quadruple mutant (N51I+C59R+S108N+I164L) Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS V1/S) complexed with FB8, NADPH and dUMP
分子名称: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 4-[4-[4-[2,4-bis(azanyl)-6-ethyl-pyrimidin-5-yl]oxybutoxy]phenyl]benzoic acid, Bifunctional dihydrofolate reductase-thymidylate synthase, ...
著者Vanichtanankul, J, Vitsupakorn, D, Saeyang, T, Arwon, U, Hoarau, M, Decharuangsilp, S, Kamchonwongpaisan, S, Yuthavong, Y.
登録日2024-03-19
公開日2024-09-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Novel flexible biphenyl Pf DHFR inhibitors with improved antimalarial activity.
Rsc Med Chem, 15, 2024
8YQ9
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Quadruple mutant (N51I+C59R+S108N+I164L) Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS V1/S) complexed with FB6, NADPH and dUMP
分子名称: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 4-[4-[3-[2,4-bis(azanyl)-6-ethyl-pyrimidin-5-yl]oxypropoxy]phenyl]benzoic acid, Bifunctional dihydrofolate reductase-thymidylate synthase, ...
著者Vanichtanankul, J, Vitsupakorn, D, Saeyang, T, Arwon, U, Hoarau, M, Decharuangsilp, S, Kamchonwongpaisan, S, Yuthavong, Y.
登録日2024-03-19
公開日2024-09-11
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Novel flexible biphenyl Pf DHFR inhibitors with improved antimalarial activity.
Rsc Med Chem, 15, 2024
8YQP
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Crystal structure of HylD1 in complex with MEP
分子名称: 2-ethoxycarbonylbenzoic acid, Lipase
著者Wang, N, Li, C.Y.
登録日2024-03-19
公開日2024-07-31
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Molecular insights into the catalytic mechanism of a phthalate ester hydrolase.
J Hazard Mater, 476, 2024
8YR2
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Structure of NET-Nisoxetine in outward-open state
分子名称: CHLORIDE ION, CHOLESTEROL, SODIUM ION, ...
著者Zhang, H, Xu, E.H, Jiang, Y.
登録日2024-03-20
公開日2024-05-29
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.89 Å)
主引用文献Dimerization and antidepressant recognition at noradrenaline transporter.
Nature, 630, 2024
8YRF
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Crystal structure of LmrR with V15 replaced by unnatural amino acid 4-amino-L-phenyl-cysteine
分子名称: 1,2-ETHANEDIOL, Transcriptional regulator, PadR-like family
著者Zhou, Z, Huang, W.
登録日2024-03-21
公開日2024-04-24
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献Crystal structure of LmrR with V15 replaced by unnatural amino acid 4-amino-L-phenyl-cysteine
To Be Published
8YRG
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CryoEM structure of fospropofol-bound MRGPRX4-Gq complex
分子名称: Gs-mini-Gq chimera, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Cao, C, Fay, J.F, Roth, B.L.
登録日2024-03-21
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (3.14 Å)
主引用文献MRGPRX4 mediates phospho-drug-associated pruritus in a humanized mouse model.
Sci Transl Med, 16, 2024
8YRO
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SARS-CoV-2 Delta Spike in complex with JL-8C
分子名称: JL-8C Heavy Chain, JL-8C Light Chain, Spike glycoprotein
著者Nguyen, V.H.T, Chen, X.
登録日2024-03-21
公開日2024-06-05
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3.27 Å)
主引用文献The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine.
Plos Pathog., 20, 2024
8YS2
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Overall structure of Eastern Equine Encephalitis virus VLP in complex with the receptor VLDLR LA1-2
分子名称: CALCIUM ION, Capsid protein, Spike glycoprotein E1, ...
著者Cao, D, Ma, B, Cao, Z, Xu, X, Zhang, X, Xiang, Y.
登録日2024-03-22
公開日2024-08-28
実験手法ELECTRON MICROSCOPY (5.2 Å)
主引用文献The receptor VLDLR binds Eastern Equine Encephalitis virus through multiple distinct modes.
Nat Commun, 15, 2024
8YSX
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canine immunoproteasome 20S subunit in complex with compound 2
分子名称: Proteasome subunit alpha type, Proteasome subunit beta, Proteasome subunit beta type-8, ...
著者Kashima, A, Arai, Y.
登録日2024-03-24
公開日2024-07-31
実験手法ELECTRON MICROSCOPY (2.2 Å)
主引用文献Optimization of alpha-amido boronic acids via cryo-electron microscopy analysis: Discovery of a novel highly selective immunoproteasome subunit LMP7 ( beta 5i)/LMP2 ( beta 1i) dual inhibitor.
Bioorg.Med.Chem., 109, 2024
8YTO
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BU of 8yto by Molmil
Single-chain Fv antibody of E11 complex with NP-glycine
分子名称: 2-[2-(3-nitro-4-oxidanyl-phenyl)ethanoylamino]ethanoic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ...
著者Yoshida, M, Hanazono, Y, Numoto, N, Ito, N, Oda, M.
登録日2024-03-26
公開日2024-07-03
最終更新日2024-07-10
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Affinity-matured antibody with a disulfide bond in H-CDR3 loop.
Arch.Biochem.Biophys., 758, 2024
8YTP
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Single-chain Fv antibody of E11 complex with NP-glycine under reducing conditions
分子名称: 2-[2-(3-nitro-4-oxidanyl-phenyl)ethanoylamino]ethanoic acid, Single-chain Fv antibody of E11
著者Yoshida, M, Hanazono, Y, Numoto, N, Ito, N, Oda, M.
登録日2024-03-26
公開日2024-07-03
最終更新日2024-07-10
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Affinity-matured antibody with a disulfide bond in H-CDR3 loop.
Arch.Biochem.Biophys., 758, 2024
8YTX
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Tubulin-RB3-TTL in complex with compound SI9
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-chloranyl-~{N}-(4-methoxyphenyl)-~{N}-methyl-thieno[2,3-d]pyrimidin-4-amine, CALCIUM ION, ...
著者Wu, C.Y, Wang, Y.X.
登録日2024-03-26
公開日2024-06-05
実験手法X-RAY DIFFRACTION (2.53 Å)
主引用文献Tubulin-RB3-TTL in complex with compound SI9
To Be Published
8YU9
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Tubulin-RB3-TTL in complex with compound SI10
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4-(2-chloranylthieno[3,2-d]pyrimidin-4-yl)-7-methoxy-1,3-dihydroquinoxalin-2-one, CALCIUM ION, ...
著者Wu, C.Y, Wang, Y.X.
登録日2024-03-27
公開日2024-06-05
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献The crystal structure of tubulin-RB3-TTL in complex with compound AB10
To Be Published
8YUA
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Tubulin-RB3-TTL in complex with compound SI10
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-chloranyl-~{N}-(4-methoxyphenyl)-~{N}-methyl-thieno[3,2-d]pyrimidin-4-amine, CALCIUM ION, ...
著者Wu, C.Y, Wang, Y.X.
登録日2024-03-27
公開日2024-06-05
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献The complex structure of tubulin-RB3-TTL in complex with compound SI10
To Be Published
8YUT
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Cryo-EM structure of the amthamine-bound H2R-Gs complex
分子名称: 5-(2-azanylethyl)-4-methyl-1,3-thiazol-2-amine, CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Shen, Q, Tang, X, Wen, X, Cheng, S, Xiao, P, Zang, S, Shen, D, Jiang, L, Zheng, Y, Zhang, H, Xu, H, Mao, C, Zhang, M, Hu, W, Sun, J, Chen, Z, Zhang, Y.
登録日2024-03-27
公開日2024-06-05
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Molecular Determinant Underlying Selective Coupling of Primary G-Protein by Class A GPCRs.
Adv Sci, 11, 2024
8YUV
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Cryo-EM structure of the immepip-bound H3R-Gi complex
分子名称: 4-(1H-imidazol-5-ylmethyl)piperidine, CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Shen, Q, Tang, X, Wen, X, Cheng, S, Xiao, P, Zang, S, Shen, D, Jiang, L, Zheng, Y, Zhang, H, Xu, H, Mao, C, Zhang, M, Hu, W, Sun, J, Chen, Z, Zhang, Y.
登録日2024-03-27
公開日2024-06-05
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Molecular Determinant Underlying Selective Coupling of Primary G-Protein by Class A GPCRs.
Adv Sci, 11, 2024
8YVG
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canine immunoproteasome 20S subunit in complex with compound 1
分子名称: Proteasome subunit alpha type, Proteasome subunit beta, Proteasome subunit beta type-8, ...
著者Kashima, A, Arai, Y.
登録日2024-03-28
公開日2024-07-31
実験手法ELECTRON MICROSCOPY (2 Å)
主引用文献Optimization of alpha-amido boronic acids via cryo-electron microscopy analysis: Discovery of a novel highly selective immunoproteasome subunit LMP7 ( beta 5i)/LMP2 ( beta 1i) dual inhibitor.
Bioorg.Med.Chem., 109, 2024

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件を2024-09-11に公開中

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