PDB形式変換不可の PDB エントリー

5NRL	Structure of a pre-catalytic spliceosome. 分子名称: 13 kDa ribonucleoprotein-associated protein, 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component, 66 kDa U4/U6.U5 small nuclear ribonucleoprotein component, ... 著者 Plaschka, C, Lin, P.-C, Nagai, K. 登録日 2017-04-24 公開日 2017-05-31 最終更新日 2023-05-24 実験手法 ELECTRON MICROSCOPY (7.2 Å) 主引用文献 Structure of a pre-catalytic spliceosome. Nature, 546, 2017
5NWY	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Su, T, Cheng, J, Sohmen, D, Hedman, R, Berninghausen, O, von Heijne, G, Wilson, D.N, Beckmann, R. 登録日 2017-05-08 公開日 2017-07-19 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (2.93 Å) 主引用文献 The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling. Elife, 6, 2017
5O09	BtubABC mini microtubule 分子名称: Bacterial kinesin light chain, GUANOSINE-5'-DIPHOSPHATE, Tubulin, ... 著者 Deng, X, Bharat, T.A.M, Lowe, J. 登録日 2017-05-16 公開日 2017-07-19 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Four-stranded mini microtubules formed by Prosthecobacter BtubAB show dynamic instability. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5O2R	Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Graf, M, Berninghausen, O, Beckmann, R, Wilson, D.N. 登録日 2017-05-22 公開日 2017-07-26 最終更新日 2019-02-20 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 An antimicrobial peptide that inhibits translation by trapping release factors on the ribosome. Nat. Struct. Mol. Biol., 24, 2017
5O61	The complete structure of the Mycobacterium smegmatis 70S ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hentschel, J, Burnside, C, Mignot, I, Leibundgut, M, Boehringer, D, Ban, N. 登録日 2017-06-03 公開日 2017-07-12 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.31 Å) 主引用文献 The Complete Structure of the Mycobacterium smegmatis 70S Ribosome. Cell Rep, 20, 2017
5OBM	Crystal structure of Gentamicin bound to the yeast 80S ribosome 分子名称: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 18S ribosomal RNA, 25S ribosomal RNA, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-06-28 公開日 2017-12-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5OJQ	The modeled structure of of wild type extended type VI secretion system sheath/tube complex in vibrio cholerae based on cryo-EM reconstruction of the non-contractile sheath/tube complex 分子名称: Haemolysin co-regulated protein, Type VI secretion protein, VipA 著者 Wang, J, Brackmann, M, Castano-Diez, D, Kudryashev, M, Goldie, K, Maier, T, Stahlberg, H, Basler, M. 登録日 2017-07-22 公開日 2017-08-09 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Cryo-EM structure of the extended type VI secretion system sheath-tube complex. Nat Microbiol, 2, 2017
5ON6	Crystal structure of haemanthamine bound to the 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Pellegrino, S, Meyer, M, Yusupova, G, Yusupov, M. 登録日 2017-08-03 公開日 2018-02-28 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.10000240787 Å) 主引用文献 The Amaryllidaceae Alkaloid Haemanthamine Binds the Eukaryotic Ribosome to Repress Cancer Cell Growth. Structure, 26, 2018
5OQL	Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum 分子名称: 35S rRNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ... 著者 Cheng, J, Kellner, N, Berninghausen, O, Hurt, E, Beckmann, R. 登録日 2017-08-12 公開日 2017-10-11 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 3.2- angstrom -resolution structure of the 90S preribosome before A1 pre-rRNA cleavage. Nat. Struct. Mol. Biol., 24, 2017
5OT7	Elongation factor G-ribosome complex captures in the absence of inhibitors. 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Mace, K, Giudice, E, Chat, S, Gillet, R. 登録日 2017-08-21 公開日 2018-02-14 最終更新日 2018-04-11 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 The structure of an elongation factor G-ribosome complex captured in the absence of inhibitors. Nucleic Acids Res., 46, 2018
5SZS	Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... 著者 Walls, A.C, Tortorici, M.A, Frenz, B, Snijder, J, Li, W, Rey, F.A, DiMaio, F, Bosch, B.J, Veesler, D. 登録日 2016-08-15 公開日 2016-09-14 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy. Nat.Struct.Mol.Biol., 23, 2016
5T0C	Structural basis for dynamic regulation of the human 26S proteasome 分子名称: 26S protease regulatory subunit 10B, 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, ... 著者 Chen, S, Wu, J, Lu, Y, Ma, Y.B, Lee, B.H, Yu, Z, Ouyang, Q, Finley, D, Kirschner, M.W, Mao, Y. 登録日 2016-08-15 公開日 2016-10-19 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural basis for dynamic regulation of the human 26S proteasome. Proc.Natl.Acad.Sci.USA, 113, 2016
5T15	Structural basis for gating and activation of RyR1 (30 uM Ca2+ dataset, all particles) 分子名称: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1, ... 著者 Clarke, O.B, des Georges, A, Zalk, R, Marks, A.R, Hendrickson, W.A, Frank, J. 登録日 2016-08-17 公開日 2016-10-12 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural Basis for Gating and Activation of RyR1. Cell, 167, 2016
5T2A	CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution 分子名称: 18S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Zhang, X, Lai, M, Zhou, Z.H. 登録日 2016-08-23 公開日 2017-01-25 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structures and stabilization of kinetoplastid-specific split rRNAs revealed by comparing leishmanial and human ribosomes. Nat Commun, 7, 2016
5T2C	CryoEM structure of the human ribosome at 3.6 Angstrom resolution 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Zhang, X, Lai, M, Zhou, Z.H. 登録日 2016-08-23 公開日 2017-01-25 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structures and stabilization of kinetoplastid-specific split rRNAs revealed by comparing leishmanial and human ribosomes. Nat Commun, 7, 2016
5T3X	3.9 Angstrom Crystal Structure of a Fully and Natively Glycosylated BG505 SOSIP.664 HIV-1 Env Trimer in Complex with the Broadly Neutralizing Antibodies IOMA and 10-1074. 分子名称: 10-1074 Heavy Chain, 10-1074 Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Gristick, H.B, Bjorkman, P.J. 登録日 2016-08-26 公開日 2016-10-05 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Natively glycosylated HIV-1 Env structure reveals new mode for antibody recognition of the CD4-binding site. Nat.Struct.Mol.Biol., 23, 2016
5T5H	Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit 分子名称: 40S ribosomal protein L14, 5.8S rRNA, 5S rRNA, ... 著者 Liu, Z, Gutierrez-Vargas, C, Wei, J, Grassucci, R.A, Ramesh, M, Espina, N, Sun, M, Tutuncuoglu, B, Madison-Antenucci, S, Woolford Jr, J.L, Tong, L, Frank, J. 登録日 2016-08-31 公開日 2016-10-12 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (2.54 Å) 主引用文献 Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit. Proc.Natl.Acad.Sci.USA, 113, 2016
5T61	TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE FROM METHANOTHERMOBACTER WOLFEII, TRICLINIC FORM AT 2.55 A 分子名称: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CHLORIDE ION, HYDROSULFURIC ACID, ... 著者 Wagner, T, Ermler, U, Shima, S. 登録日 2016-09-01 公開日 2016-10-19 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters. Science, 354, 2016
5T62	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex 分子名称: 25S Ribosomal RNA, 5.8S Ribosomal RNA, 5S Ribosomal RNA, ... 著者 Malyutin, A.G, Musalgaonkar, S, Patchett, S, Frank, J, Johnson, A.W. 登録日 2016-09-01 公開日 2017-02-08 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis. EMBO J., 36, 2017
5T6R	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex 分子名称: 25S Ribosomal RNA, 5.8S Ribosomal RNA, 5S Ribosomal RNA, ... 著者 Malyutin, A.G, Musalgaonkar, S, Patchett, S, Frank, J, Johnson, A.W. 登録日 2016-09-01 公開日 2017-02-08 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis. EMBO J., 36, 2017
5T7V	Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Belousoff, M.J, Lithgow, T, Eyal, Z, Yonath, A, Radjainia, M. 登録日 2016-09-06 公開日 2017-05-31 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural Basis for Linezolid Binding Site Rearrangement in theStaphylococcus aureusRibosome. MBio, 8, 2017
5T9M	Structure of rabbit RyR1 (Ca2+-only dataset, class 1) 分子名称: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1, ... 著者 Clarke, O.B, des Georges, A, Zalk, R, Marks, A.R, Hendrickson, W.A, Frank, J. 登録日 2016-09-09 公開日 2016-10-12 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structural Basis for Gating and Activation of RyR1. Cell, 167, 2016
5T9N	Structure of rabbit RyR1 (Ca2+-only dataset, class 2) 分子名称: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1, ... 著者 Clarke, O.B, des Georges, A, Zalk, R, Marks, A.R, Hendrickson, W.A, Frank, J. 登録日 2016-09-09 公開日 2016-10-12 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural Basis for Gating and Activation of RyR1. Cell, 167, 2016
5T9R	Structure of rabbit RyR1 (Ca2+-only dataset, class 3) 分子名称: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1, ... 著者 Clarke, O.B, des Georges, A, Zalk, R, Marks, A.R, Hendrickson, W.A, Frank, J. 登録日 2016-09-09 公開日 2016-10-12 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (5.8 Å) 主引用文献 Structural Basis for Gating and Activation of RyR1. Cell, 167, 2016
5T9S	Structure of rabbit RyR1 (Ca2+-only dataset, class 4) 分子名称: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1, ... 著者 Clarke, O.B, des Georges, A, Zalk, R, Marks, A.R, Hendrickson, W.A, Frank, J. 登録日 2016-09-09 公開日 2016-10-12 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural Basis for Gating and Activation of RyR1. Cell, 167, 2016

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