Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB形式変換不可の PDB エントリー
5EL7
DownloadVisualize
BU of 5el7 by Molmil
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Rozov, A, Demeshkina, N, Khusainov, I, Yusupov, M, Yusupova, G.
登録日2015-11-04
公開日2016-01-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.
Nat Commun, 7, 2016
5EPI
DownloadVisualize
BU of 5epi by Molmil
CRYSTAL STRUCTURE OF INFLUENZA B POLYMERASE WITH BOUND 5' CRNA EXHIBITS A NOVEL DOMAIN ARRANGEMENT
分子名称: CRNA 5' END, Polymerase acidic protein, Polymerase basic protein 2, ...
著者Guilligay, D, Cusack, S.
登録日2015-11-11
公開日2016-01-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (4.1 Å)
主引用文献Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains.
Mol.Cell, 61, 2016
5EUJ
DownloadVisualize
BU of 5euj by Molmil
PYRUVATE DECARBOXYLASE FROM ZYMOBACTER PALMAE
分子名称: 1,2-ETHANEDIOL, MAGNESIUM ION, Pyruvate decarboxylase, ...
著者Buddrus, L, Crennell, S.J, Leak, D.J, Danson, M.J, Andrews, E.S.V, Arcus, V.L.
登録日2015-11-18
公開日2016-09-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of pyruvate decarboxylase from Zymobacter palmae.
Acta Crystallogr.,Sect.F, 72, 2016
5EXC
DownloadVisualize
BU of 5exc by Molmil
Photoconverted red fluorescent protein DendRFP
分子名称: GLYCEROL, Green fluorescent protein, MAGNESIUM ION
著者Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
登録日2015-11-23
公開日2016-08-03
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Crystal structure of the fluorescent protein from Dendronephthya sp. in both green and photoconverted red forms.
Acta Crystallogr D Struct Biol, 72, 2016
5F8K
DownloadVisualize
BU of 5f8k by Molmil
Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Seefeldt, A.C, Graf, M, Perebaskine, N, Nguyen, F, Arenz, S, Mardirossian, M, Scocchi, M, Wilson, D.N, Innis, C.A.
登録日2015-12-09
公開日2016-02-03
最終更新日2025-03-12
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of the mammalian antimicrobial peptide Bac7(1-16) bound within the exit tunnel of a bacterial ribosome.
Nucleic Acids Res., 44, 2016
5FCI
DownloadVisualize
BU of 5fci by Molmil
Structure of the vacant uL3 W255C mutant 80S yeast ribosome
分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
著者Mailliot, J, Garreau de Loubresse, N, Yusupova, G, Dinman, J.D, Yusupov, M.
登録日2015-12-15
公開日2016-05-11
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency.
J.Mol.Biol., 428, 2016
5FCJ
DownloadVisualize
BU of 5fcj by Molmil
Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome
分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
著者Mailliot, J, Garreau de Loubresse, N, Yusupova, G, Dinman, J.D, Yusupov, M.
登録日2015-12-15
公開日2016-05-11
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency.
J.Mol.Biol., 428, 2016
5FDU
DownloadVisualize
BU of 5fdu by Molmil
Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Seefeldt, A.C, Graf, M, Perebaskine, N, Nguyen, F, Arenz, S, Mardirossian, M, Scocchi, M, Wilson, D.N, Innis, C.A.
登録日2015-12-16
公開日2016-01-27
最終更新日2025-03-12
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of the mammalian antimicrobial peptide Bac7(1-16) bound within the exit tunnel of a bacterial ribosome.
Nucleic Acids Res., 44, 2016
5FDV
DownloadVisualize
BU of 5fdv by Molmil
Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Seefeldt, A.C, Graf, M, Perebaskine, N, Nguyen, F, Arenz, S, Mardirossian, M, Scocchi, M, Wilson, D.N, Innis, C.A.
登録日2015-12-16
公開日2016-01-27
最終更新日2025-03-12
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of the mammalian antimicrobial peptide Bac7(1-16) bound within the exit tunnel of a bacterial ribosome.
Nucleic Acids Res., 44, 2016
5FKI
DownloadVisualize
BU of 5fki by Molmil
Pseudorabies virus (PrV) nuclear egress complex proteins fitted as a hexameric lattice into a sub-tomogram average derived from focused- ion beam milled lamellae electron cryo-microscopic data
分子名称: CHLORIDE ION, UL31, UL34 protein, ...
著者Hagen, C, Dent, K.C, Zeev Ben Mordehai, T, Vasishtan, D, Antonin, W, Mettenleiter, T.C, Gruenewald, K.
登録日2015-10-16
公開日2016-03-16
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (35 Å)
主引用文献Crystal Structure of the Herpesvirus Nuclear Egress Complex Provides Insights Into Inner Nuclear Membrane Remodelling
Cell Rep., 13, 2015
5FUU
DownloadVisualize
BU of 5fuu by Molmil
Ectodomain of cleaved wild type JR-FL EnvdCT trimer in complex with PGT151 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Lee, J.H, Ward, A.B.
登録日2016-01-29
公開日2016-03-09
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (4.19 Å)
主引用文献Cryo-Em Structure of a Native, Fully Glycosylated and Cleaved HIV-1 Envelope Trimer
Science, 351, 2016
5GAK
DownloadVisualize
BU of 5gak by Molmil
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
分子名称: 25S rRNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, 5.8S rRNA, ...
著者Schmidt, C, Becker, T.
登録日2015-12-09
公開日2016-02-24
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.88 Å)
主引用文献Structure of the hypusinylated eukaryotic translation factor eIF-5A bound to the ribosome.
Nucleic Acids Res., 44, 2016
5GJR
DownloadVisualize
BU of 5gjr by Molmil
An atomic structure of the human 26S proteasome
分子名称: 26S protease regulatory subunit 10B, 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, ...
著者Huang, X.L, Luan, B, Wu, J.P, Shi, Y.G.
登録日2016-07-01
公開日2016-09-07
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献An atomic structure of the human 26S proteasome.
Nat. Struct. Mol. Biol., 23, 2016
5GKY
DownloadVisualize
BU of 5gky by Molmil
Structure of RyR1 in a closed state (C1 conformer)
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1A, Ryanodine receptor 1, ZINC ION
著者Bai, X.C, Yan, Z, Wu, J.P, Yan, N.
登録日2016-07-07
公開日2016-08-24
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献The Central domain of RyR1 is the transducer for long-range allosteric gating of channel opening
Cell Res., 26, 2016
5GKZ
DownloadVisualize
BU of 5gkz by Molmil
Structure of RyR1 in a closed state (C3 conformer)
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1A, Ryanodine receptor 1, ZINC ION
著者Bai, X.C, Yan, Z, Wu, J.P, Yan, N.
登録日2016-07-07
公開日2016-08-24
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献The Central domain of RyR1 is the transducer for long-range allosteric gating of channel opening
Cell Res., 26, 2016
5GL0
DownloadVisualize
BU of 5gl0 by Molmil
Structure of RyR1 in a closed state (C4 conformer)
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1A, Ryanodine receptor 1, ZINC ION
著者Bai, X.C, Yan, Z, Wu, J.P, Yan, N.
登録日2016-07-07
公開日2016-08-24
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献The Central domain of RyR1 is the transducer for long-range allosteric gating of channel opening
Cell Res., 26, 2016
5GL1
DownloadVisualize
BU of 5gl1 by Molmil
Structure of RyR1 in an open state
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1A, Ryanodine receptor 1, ZINC ION
著者Bai, X.C, Yan, Z, Wu, J.P, Yan, N.
登録日2016-07-07
公開日2016-08-24
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (5.7 Å)
主引用文献The Central domain of RyR1 is the transducer for long-range allosteric gating of channel opening
Cell Res., 26, 2016
5GM6
DownloadVisualize
BU of 5gm6 by Molmil
Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cold sensitive U2 snRNA suppressor 1, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Yan, C, Wan, R, Bai, R, Huang, G, Shi, Y.
登録日2016-07-12
公開日2016-09-21
最終更新日2024-11-27
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structure of a yeast activated spliceosome at 3.5 angstrom resolution
Science, 353, 2016
5GO9
DownloadVisualize
BU of 5go9 by Molmil
Cryo-EM structure of RyR2 in closed state
分子名称: RyR2, ZINC ION
著者Peng, W, Wu, J.P, Yan, N.
登録日2016-07-26
公開日2016-10-05
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Structural basis for the gating mechanism of the type 2 ryanodine receptor RyR2
Science, 354, 2016
5GOA
DownloadVisualize
BU of 5goa by Molmil
Cryo-EM structure of RyR2 in open state
分子名称: RyR2, ZINC ION
著者Peng, W, Wu, J.P, Yan, N.
登録日2016-07-26
公開日2016-10-05
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Structural basis for the gating mechanism of the type 2 ryanodine receptor RyR2
Science, 354, 2016
5GPN
DownloadVisualize
BU of 5gpn by Molmil
Architecture of mammalian respirasome
分子名称: Acyl carrier protein, COPPER (II) ION, Cytochrome b, ...
著者Gu, J, Wu, M, Guo, R, Yang, M.
登録日2016-08-03
公開日2017-04-05
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (5.4 Å)
主引用文献The architecture of the mammalian respirasome.
Nature, 537, 2016
5GUP
DownloadVisualize
BU of 5gup by Molmil
Cryo-EM structure of mammalian respiratory supercomplex I1III2IV1
分子名称: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Acyl carrier protein, ...
著者Gu, J, Wu, M, Guo, R, Yang, M.
登録日2016-08-30
公開日2017-03-29
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structure of Mammalian Respiratory Supercomplex I1III2IV1
Cell, 167, 2016
5H4P
DownloadVisualize
BU of 5h4p by Molmil
Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
著者Ma, C, Wu, S, Li, N, Chen, Y, Yan, K, Li, Z, Zheng, L, Lei, J, Woolford, J.L, Gao, N.
登録日2016-11-01
公開日2017-01-25
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.07 Å)
主引用文献Structural snapshot of cytoplasmic pre-60S ribosomal particles bound by Nmd3, Lsg1, Tif6 and Reh1
Nat. Struct. Mol. Biol., 24, 2017
5H5U
DownloadVisualize
BU of 5h5u by Molmil
Mechanistic insights into the alternative translation termination by ArfA and RF2
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Ma, C, Kurita, D, Li, N, Chen, Y, Himeno, H, Gao, N.
登録日2016-11-09
公開日2017-01-25
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.01 Å)
主引用文献Mechanistic insights into the alternative translation termination by ArfA and RF2
Nature, 541, 2017
5HAU
DownloadVisualize
BU of 5hau by Molmil
Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Gagnon, M.G, Roy, R.N, Lomakin, I.B, Florin, T, Mankin, A.S, Steitz, T.A.
登録日2015-12-30
公開日2016-04-06
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition.
Nucleic Acids Res., 44, 2016

240971

件を2025-08-27に公開中

PDB statisticsPDBj update infoContact PDBjnumon