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Legacy flatfile-incompatible PDB entries
6I7V
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BU of 6i7v by Molmil
Ribosomal protein paralogs bL31 and bL36
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ...
Authors:Pulk, A, Cate, J.H.D, Remme, J, Lilleorg, S, Reier, K, Peil, L, Liiv, A, Tammsalu, T.
Deposit date:2018-11-19
Release date:2018-12-05
Last modified:2025-03-12
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Bacterial ribosome heterogeneity: Changes in ribosomal protein composition during transition into stationary growth phase.
Biochimie, 156, 2018
6I9R
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BU of 6i9r by Molmil
Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin
Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ...
Authors:Modelska, A, Aibara, S, Amunts, A.
Deposit date:2018-11-25
Release date:2020-07-08
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Inhibition of mitochondrial translation suppresses glioblastoma stem cell growth.
Cell Rep, 35, 2021
6IA9
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BU of 6ia9 by Molmil
urate oxidase under 2000 bar (220 MPa) of argon
Descriptor: 8-AZAXANTHINE, ACETYL GROUP, ARGON, ...
Authors:Prange, T, Colloc'h, N, Carpentier, P.
Deposit date:2018-11-26
Release date:2019-12-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Comparative study of the effects of high hydrostatic pressure per se and high argon pressure on urate oxidase ligand stabilization
Acta Cryst. D, 78, 2022
6IGC
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BU of 6igc by Molmil
Crystal structure of HPV58/33/52 chimeric L1 pentamer
Descriptor: Major capsid protein L1
Authors:Li, Z.H, Song, S, He, M.Z, Gu, Y, Li, S.W.
Deposit date:2018-09-25
Release date:2018-11-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Rational design of a triple-type human papillomavirus vaccine by compromising viral-type specificity.
Nat Commun, 9, 2018
6IP5
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BU of 6ip5 by Molmil
Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T.
Deposit date:2018-11-02
Release date:2019-05-29
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:HCV IRES Captures an Actively Translating 80S Ribosome.
Mol.Cell, 74, 2019
6IP6
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BU of 6ip6 by Molmil
Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T.
Deposit date:2018-11-02
Release date:2019-05-29
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:HCV IRES Captures an Actively Translating 80S Ribosome.
Mol.Cell, 74, 2019
6IP8
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BU of 6ip8 by Molmil
Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T.
Deposit date:2018-11-02
Release date:2019-05-29
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:HCV IRES Captures an Actively Translating 80S Ribosome.
Mol.Cell, 74, 2019
6IQH
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BU of 6iqh by Molmil
X-ray crystal structure of covalent-bonded complex of Fc and peptide
Descriptor: 17-mer peptide (GPDCAYHKGELVWCTFH), 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin gamma-1 heavy chain
Authors:Adachi, M, Ito, Y.
Deposit date:2018-11-08
Release date:2019-02-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.999 Å)
Cite:Site-Specific Chemical Conjugation of Antibodies by Using Affinity Peptide for the Development of Therapeutic Antibody Format.
Bioconjug. Chem., 30, 2019
6J0N
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BU of 6j0n by Molmil
Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry
Descriptor: Pvc1, Pvc11, Pvc12, ...
Authors:Jiang, F, Li, N, Wang, X, Cheng, J, Huang, Y, Yang, Y, Yang, J, Cai, B, Wang, Y, Jin, Q, Gao, N.
Deposit date:2018-12-25
Release date:2019-04-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM Structure and Assembly of an Extracellular Contractile Injection System.
Cell, 177, 2019
6J2C
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BU of 6j2c by Molmil
Yeast proteasome in translocation competent state (C3-a)
Descriptor: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ...
Authors:Cong, Y.
Deposit date:2019-01-01
Release date:2019-03-13
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Structural Snapshots of 26S Proteasome Reveal Tetraubiquitin-Induced Conformations.
Mol. Cell, 73, 2019
6J2N
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BU of 6j2n by Molmil
yeast proteasome in substrate-processing state (C3-b)
Descriptor: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ...
Authors:Cong, Y.
Deposit date:2019-01-02
Release date:2019-03-20
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:Structural Snapshots of 26S Proteasome Reveal Tetraubiquitin-Induced Conformations.
Mol. Cell, 73, 2019
6J2Q
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BU of 6j2q by Molmil
Yeast proteasome in Ub-accepted state (C1-b)
Descriptor: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ...
Authors:Cong, Y.
Deposit date:2019-01-02
Release date:2019-03-13
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural Snapshots of 26S Proteasome Reveal Tetraubiquitin-Induced Conformations.
Mol. Cell, 73, 2019
6J2X
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BU of 6j2x by Molmil
Yeast proteasome in resting state (C1-a)
Descriptor: 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG, 26S PROTEASOME REGULATORY SUBUNIT RPN5, 26S proteasome complex subunit SEM1, ...
Authors:Cong, Y.
Deposit date:2019-01-03
Release date:2019-03-13
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural Snapshots of 26S Proteasome Reveal Tetraubiquitin-Induced Conformations.
Mol. Cell, 73, 2019
6J30
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BU of 6j30 by Molmil
yeast proteasome in Ub-engaged state (C2)
Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, ...
Authors:Cong, Y.
Deposit date:2019-01-03
Release date:2019-03-20
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural Snapshots of 26S Proteasome Reveal Tetraubiquitin-Induced Conformations.
Mol. Cell, 73, 2019
6J3Y
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BU of 6j3y by Molmil
Structure of C2S2-type PSII-FCPII supercomplex from diatom
Descriptor: (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Nagao, R, Kato, K, Shen, J.R, Miyazaki, N, Akita, F.
Deposit date:2019-01-07
Release date:2019-08-07
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Nat.Plants, 5, 2019
6J3Z
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BU of 6j3z by Molmil
Structure of C2S1M1-type PSII-FCPII supercomplex from diatom
Descriptor: (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Nagao, R, Kato, K, Shen, J.R, Miyazaki, N, Akita, F.
Deposit date:2019-01-07
Release date:2019-08-07
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Nat.Plants, 5, 2019
6J40
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BU of 6j40 by Molmil
Structure of C2S2M2-type PSII-FCPII supercomplex from diatom
Descriptor: (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Nagao, R, Kato, K, Shen, J.R, Miyazaki, N, Akita, F.
Deposit date:2019-01-07
Release date:2019-08-07
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Nat.Plants, 5, 2019
6J5K
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BU of 6j5k by Molmil
Cryo-EM structure of the mammalian ATP synthase tetramer bound with inhibitory protein IF1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase F1 subunit alpha, ...
Authors:Gu, J, Zhang, L, Yi, J, Yang, M.
Deposit date:2019-01-11
Release date:2019-06-26
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Cryo-EM structure of the mammalian ATP synthase tetramer bound with inhibitory protein IF1.
Science, 364, 2019
6JEO
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BU of 6jeo by Molmil
Structure of PSI tetramer from Anabaena
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Kato, K, Nagao, R, Shen, J.R, Miyazaki, N, Akita, F.
Deposit date:2019-02-06
Release date:2019-11-13
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of a cyanobacterial photosystem I tetramer revealed by cryo-electron microscopy.
Nat Commun, 10, 2019
6JG3
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BU of 6jg3 by Molmil
Cryo-EM structure of RyR2 (Ca2+ alone dataset)
Descriptor: Ryanodine receptor 2, ZINC ION
Authors:Chi, X.M, Gong, D.S, Ren, K, Zhou, G.W, Huang, G.X.Y, Lei, J.L, Zhou, Q, Yan, N.
Deposit date:2019-02-13
Release date:2019-12-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Molecular basis for allosteric regulation of the type 2 ryanodine receptor channel gating by key modulators.
Proc.Natl.Acad.Sci.USA, 116, 2019
6JGZ
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BU of 6jgz by Molmil
Structure of RyR2 (F/P/Ca2+ dataset)
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1B, RyR2, ZINC ION
Authors:Chi, X.M, Gong, D.S, Ren, K, Zhou, G.W, Huang, G.X.Y, Lei, J.L, Zhou, Q, Yan, N.
Deposit date:2019-02-16
Release date:2019-12-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Molecular basis for allosteric regulation of the type 2 ryanodine receptor channel gating by key modulators.
Proc.Natl.Acad.Sci.USA, 116, 2019
6JH6
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BU of 6jh6 by Molmil
Structure of RyR2 (F/A/Ca2+ dataset)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Peptidyl-prolyl cis-trans isomerase FKBP1B, RyR2, ...
Authors:Chi, X.M, Gong, D.S, Ren, K, Zhou, G.W, Huang, G.X.Y, Lei, J.L, Zhou, Q, Yan, N.
Deposit date:2019-02-17
Release date:2019-12-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Molecular basis for allosteric regulation of the type 2 ryanodine receptor channel gating by key modulators.
Proc.Natl.Acad.Sci.USA, 116, 2019
6JHN
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BU of 6jhn by Molmil
Structure of RyR2 (F/C/Ca2+ dataset)
Descriptor: CAFFEINE, CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ...
Authors:Chi, X.M, Gong, D.S, Ren, K, Zhou, G.W, Huang, G.X.Y, Lei, J.L, Zhou, Q, Yan, N.
Deposit date:2019-02-18
Release date:2019-12-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Molecular basis for allosteric regulation of the type 2 ryanodine receptor channel gating by key modulators.
Proc.Natl.Acad.Sci.USA, 116, 2019
6JI0
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BU of 6ji0 by Molmil
Structure of RyR2 (F/A/C/Ca2+ dataset)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
Authors:Gong, D.S, Chi, X.M, Zhou, G.W, Huang, G.X.Y, Lei, J.L, Yan, N.
Deposit date:2019-02-19
Release date:2019-07-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Modulation of cardiac ryanodine receptor 2 by calmodulin.
Nature, 572, 2019
6JI8
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BU of 6ji8 by Molmil
Structure of RyR2 (F/apoCaM dataset)
Descriptor: Calmodulin-1, Peptidyl-prolyl cis-trans isomerase FKBP1B, RyR2, ...
Authors:Gong, D.S, Chi, X.M, Zhou, G.W, Huang, G.X.Y, Lei, J.L, Yan, N.
Deposit date:2019-02-20
Release date:2019-07-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Modulation of cardiac ryanodine receptor 2 by calmodulin.
Nature, 572, 2019

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