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Open data
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Basic information
Entry | Database: PDB / ID: 4wcy | ||||||
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Title | Fab fragment of mouse AZ130 monoclonal antibody | ||||||
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![]() | IMMUNE SYSTEM / Monoclonal antibody / Epstein-Barr virus (EBV) / ZEBRA protein | ||||||
Function / homology | Immunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Fallecker, C. / Tarbouriech, N. / Habib, M. / Crepin, T. / Drouet, E. | ||||||
![]() | ![]() Title: Fab fragment of mouse AZ130 monoclonal antibody Authors: Fallecker, C. / Tarbouriech, N. / Habib, M. / Crepin, T. / Drouet, E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 102.6 KB | Display | ![]() |
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PDB format | ![]() | 76.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 457.3 KB | Display | ![]() |
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Full document | ![]() | 461.9 KB | Display | |
Data in XML | ![]() | 20.7 KB | Display | |
Data in CIF | ![]() | 30.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 4k26S S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Antibody | Mass: 23400.029 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() | ||||
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#2: Antibody | Mass: 23961.324 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() | ||||
#3: Chemical | #4: Chemical | ChemComp-SO4 / | #5: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.68 Å3/Da / Density % sol: 54.03 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop / pH: 6.5 Details: Ammonium sulfate 0.2 M, BIS-TRIS 0.1 M, Polyethylene glycol 3,350 25 %w/v |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 2M / Detector: PIXEL / Date: Jun 22, 2014 |
Radiation | Monochromator: Si (111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.873 Å / Relative weight: 1 |
Reflection | Resolution: 2→58 Å / Num. all: 35076 / Num. obs: 34652 / % possible obs: 98.8 % / Redundancy: 4.83 % / Rmerge(I) obs: 0.09 / Net I/σ(I): 13.09 |
Reflection shell | Resolution: 2→2.07 Å / Redundancy: 4.09 % / % possible all: 91.6 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 4K26 Resolution: 2→58 Å / Cor.coef. Fo:Fc: 0.953 / Cor.coef. Fo:Fc free: 0.912 / SU B: 3.625 / SU ML: 0.1 / Cross valid method: FREE R-VALUE / ESU R: 0.155 / ESU R Free: 0.151 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 20.831 Å2
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Refinement step | Cycle: 1 / Resolution: 2→58 Å
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Refine LS restraints |
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