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Yorodumi- PDB-1eap: CRYSTAL STRUCTURE OF A CATALYTIC ANTIBODY WITH A SERINE PROTEASE ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1eap | ||||||
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Title | CRYSTAL STRUCTURE OF A CATALYTIC ANTIBODY WITH A SERINE PROTEASE ACTIVE SITE | ||||||
Components |
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Keywords | CATALYTIC ANTIBODY | ||||||
Function / homology | Immunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta / PHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE / : Function and homology information | ||||||
Biological species | Mus musculus (house mouse) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.4 Å | ||||||
Authors | Zhou, G.W. / Guo, J. / Huang, W. / Scanlan, T.S. / Fletterick, R.J. | ||||||
Citation | Journal: Science / Year: 1994 Title: Crystal structure of a catalytic antibody with a serine protease active site. Authors: Zhou, G.W. / Guo, J. / Huang, W. / Scanlan, T.S. / Fletterick, R.J. #1: Journal: J.Am.Chem.Soc. / Year: 1994 Title: Kinetic and Mechanistic Characterization of an Efficient Hydrolytic Antibody: Evidence for the Formation of an Acyl Intermediate Authors: Guo, J. / Huang, W. / Scanlan, T.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1eap.cif.gz | 90.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1eap.ent.gz | 73.6 KB | Display | PDB format |
PDBx/mmJSON format | 1eap.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ea/1eap ftp://data.pdbj.org/pub/pdb/validation_reports/ea/1eap | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO A 8 / 2: CIS PROLINE - PRO A 141 / 3: CIS PROLINE - PRO B 158 4: VAL B 194 - PRO B 195 OMEGA = 230.46 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION |
-Components
#1: Antibody | Mass: 23528.225 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Mus musculus (house mouse) / References: GenBank: 12002896 |
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#2: Antibody | Mass: 22886.492 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Mus musculus (house mouse) |
#3: Chemical | ChemComp-HEP / |
Sequence details | THE SEQUENCE HAS NOT BEEN REPORTED. IT WAS DERIVED FROM THE DNA SEQUENCE OF GUO ET AL., 1994, ...THE SEQUENCE HAS NOT BEEN REPORTED. IT WAS DERIVED FROM THE DNA SEQUENCE OF GUO ET AL., 1994, LISTED IN REFERENCE 1 ABOVE. |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.84 Å3/Da / Density % sol: 56.71 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 7.5 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.5 Å / Num. obs: 13531 / Num. measured all: 34177 / Rmerge(I) obs: 0.076 |
-Processing
Software |
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Refinement | Resolution: 2.4→6 Å / σ(F): 2 /
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Refinement step | Cycle: LAST / Resolution: 2.4→6 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.186 / Highest resolution: 2.5 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d / Dev ideal: 3.078 |