[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 66 items for (author: zhang & xd)

EMDB-63944:
Microtubule doublet from wild-type mouse tracheal epithelial cells
Method: subtomogram averaging / : Zhang Y, Ni T, He M, Park HJ, Choi MJ, Cheung HO

EMDB-63946:
microtubule doublet from Kif27-/- mouse tracheal epithelial cells
Method: subtomogram averaging / : Zhang Y, Ni T, He M, Park HJ, Choi MJ, Cheung HO

EMDB-63235:
An antibody target the fusion protein of Nipah virus
Method: single particle / : Xu H, Su XD

EMDB-61620:
Cryo-EM structure of human SLFN14
Method: single particle / : Luo M, Jia XD, Wang ZW, Yang JY, Zhang QF, Gao S

EMDB-61117:
Arabidopsis ATP/ADP translocator AtNTT1
Method: single particle / : Lin HJ, Huang J, Li TM, Li WJ, Su NN, Zhang JR, Wu XD, Fan MR

EMDB-61118:
ATP bound Arabidopsis ATP/ADP translocator AtNTT1
Method: single particle / : Lin HJ, Huang J, Li TM, Li WJ, Su NN, Zhang JR, Wu XD, Fan MR

EMDB-61119:
ADP/Pi bound Arabidopsis ATP/ADP translocator AtNTT1
Method: single particle / : Lin HJ, Huang J, Li TM, Li WJ, Su NN, Zhang JR, Wu XD, Fan MR

EMDB-61120:
ATP bound Chlamydia pneumoniae ATP/ADP translocator NTT1(Inward open state)
Method: single particle / : Lin HJ, Huang J, Li TM, Li WJ, Su NN, Zhang JR, Wu XD, Fan MR

EMDB-61121:
Chlamydia pneumoniae ATP/ADP translocator NTT1(Outward open state)
Method: single particle / : Lin HJ, Huang J, Li TM, Li WJ, Su NN, Zhang JR, Wu XD, Fan MR

EMDB-60391:
Cryo-EM structure of the N2-4N2C402 complex at a resolution of 1.9 angstrom
Method: single particle / : Chu BX, Wang X, Yang Q, Wu XD, Zhang ZL

EMDB-37640:
Cryo-EM structure of DiCas7-11 in complex with crRNA
Method: single particle / : Ma HY, Tang XD

EMDB-37649:
Cryo-EM structure of DiCas7-11-crRNA in complex with regulator
Method: single particle / : Ma HY, Tang XD

EMDB-37653:
Cryo-EM structure of DiCas7-11 mutant in complex with crRNA
Method: single particle / : Ma HY, Tang XD

EMDB-37655:
Cryo-EM structure of Cas7-11-crRNA bound to N-terminal of TPR-CHAT
Method: single particle / : Ma HY, Tang XD

EMDB-38313:
Structure of yeast replisome associated with FACT and histone hexamer, the region of FACT-Histones optimized local map
Method: single particle / : Li N, Gao Y, Yu D, Gao N, Zhai Y

EMDB-38314:
Structure of yeast replisome associated with FACT and histone hexamer,Conformation-2
Method: single particle / : Li N, Gao Y, Yu D, Gao N, Zhai Y

EMDB-38315:
Structure of yeast replisome associated with FACT and histone hexamer, the region of polymerase epsilon optimized local map
Method: single particle / : Li N, Gao Y, Yu D, Gao N, Zhai Y

EMDB-38316:
Structure of yeast replisome associated with FACT and histone hexamer, Conformation-1
Method: single particle / : Li N, Gao Y, Yu D, Gao N, Zhai Y

EMDB-38317:
Structure of yeast replisome associated with FACT and histone hexamer, Composite map
Method: single particle / : Li N, Gao Y, Yu D, Gao N, Zhai Y

EMDB-34948:
Cryo-EM structure of the apo-GPR132-Gi
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-34950:
Activation mechanism of GPR132 by NPGLY
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-34951:
Activation mechanism of GPR132 by 9(S)-HODE
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-35044:
Activation mechanism of GPR132 by compound NOX-6-7
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-36751:
Outward_facing SLC15A4 monomer
Method: single particle / : Zhang SS, Chen XD, Xie M

EMDB-36752:
Outward-facing SLC15A4 dimer
Method: single particle / : Zhang SS, Chen XD, Xie M

EMDB-36753:
SLC15A4_TASL complex
Method: single particle / : Zhang SS, Chen XD, Xie M

EMDB-36754:
SLC15A4 inhibitor complex
Method: single particle / : Zhang SS, Chen XD, Xie M

EMDB-34164:
Complex structure of BD-218 and Spike protein
Method: single particle / : Wang B, Xu H, Su XD

EMDB-35916:
Cryo-EPty SPA at CSA of 3.26 mrad
Method: single particle / : Pei XD, Wang P

EMDB-35917:
Cryo-EPty SPA at CSA of 4.83 mrad
Method: single particle / : Pei XD, Wang P

EMDB-14171:
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF
Method: single particle / : Ye FZ, Zhang XD

EMDB-14172:
CryoEM structure of bacterial transcription intermediate complex mediated by activator protein PspF
Method: single particle / : Ye FZ, Zhang XD

EMDB-14190:
CryoEM structure of bacterial transcription close complex (RPc)
Method: single particle / : Ye FZ, Zhang XD

EMDB-14200:
Cryo-EM structure of RNA polymerase-sigma54 holo enzyme with promoter DNA closed complex
Method: single particle / : Ye FZ, Zhang XD

EMDB-14206:
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex
Method: single particle / : Ye FZ, Zhang XD

EMDB-14207:
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex
Method: single particle / : Ye FZ, Zhang XD

EMDB-14208:
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex
Method: single particle / : Ye FZ, Zhang XD

EMDB-32908:
Flagellar motor from wild type H. pylori
Method: subtomogram averaging / : Lu P, Zhang HW, Gao YZ, Jia XD, Liu Z, Wang DP, Au SWA, Zhang QF

EMDB-32909:
Flagellar motor of H.pylori delta-FliY mutant
Method: subtomogram averaging / : Lu P, Zhang HW, Gao YZ, Jia XD, Liu Z, Wang DP, Au SWA, Zhang QF

EMDB-32910:
Flagellar motor of H.pylori FliYc mutant
Method: subtomogram averaging / : Lu P, Zhang HW, Gao YZ, Jia XD, Liu Z, Wang DP, Au SWA, Zhang QF

EMDB-11882:
LolCDE in complex with lipoprotein
Method: single particle / : Tang XD, Chang SH

EMDB-11883:
LolCDE apo structure
Method: single particle / : Tang XD, Chang SH

EMDB-11884:
LolCDE in complex with lipoprotein and AMPPNP complex undimerized form
Method: single particle / : Tang XD, Chang SH

EMDB-11885:
LolCDE in complex with AMP-PNP in the closed NBD state
Method: single particle / : Tang XD, Chang SH

EMDB-11886:
LolCDE in complex with lipoprotein and ADP
Method: single particle / : Tang XD, Chang SH

EMDB-11887:
LolCDE in complex with lipoprotein and LolA
Method: single particle / : Tang XD, Chang SH

EMDB-30247:
BD23-Fab in complex with the S ectodomain trimer
Method: single particle / : Zhu Q, Wang G

EMDB-0958:
Cryo-EM structure of A53T alpha-synuclein amyloid fibril
Method: helical / : Sun YP, Zhao K

EMDB-4769:
Cryo-EM structure of bacterial RNAP with a DNA mimic protein Ocr from T7 phage
Method: single particle / : Ye FZ, Zhang XD

EMDB-4770:
Structural basis of transcription inhibition by the DNA mimic Ocr protein of bacteriophage T7
Method: single particle / : Ye FZ, Zhang XD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more