[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 61 items for (author: zech & j)

EMDB-52579:
Form II Rubisco inside EPYC1-formed liquid-liquid phase separated condensates with bound Magnesium and CABP
Method: single particle / : Kueffner AM, Zarzycki J, Prinz S, Erb TJ

EMDB-52458:
In vitro grown K58N Alpha-Synuclein Fibrils
Method: single particle / : Sicking K, Al-Azzani M, Outeiro TF, Fernandez-Busnadiego R

PDB-9hxa:
In vitro grown K58N Alpha-Synuclein Fibrils
Method: single particle / : Sicking K, Al-Azzani M, Outeiro TF, Fernandez-Busnadiego R

EMDB-52165:
In vitro grown WT Alpha-Synuclein Fibrils
Method: single particle / : Sicking K, Al-Azzani M, Outeiro TF, Fernandez-Busnadiego R

PDB-9hgr:
In vitro grown WT Alpha-Synuclein Fibrils
Method: single particle / : Sicking K, Al-Azzani M, Outeiro TF, Fernandez-Busnadiego R

EMDB-52166:
In vitro grown G14R Alpha-Synuclein Fibrils
Method: single particle / : Sicking K, Fernandez-Busnadiego R

PDB-9hgs:
In vitro grown G14R Alpha-Synuclein Fibrils
Method: single particle / : Sicking K, Fernandez-Busnadiego R

EMDB-18003:
ABCG2 in complex with AZ99 and 5D3 Fab
Method: single particle / : Yu Q, Kowal J, Tajkhorshid E, Altmann KH, Locher KP

EMDB-18016:
ABCG2 in complex with ko143 and 5D3 Fab
Method: single particle / : Yu Q, Kowal J, Tajkhorshid E, Altmann KH, Locher KP

EMDB-18210:
ABCG2 in complex with MZ29 and 5D3 Fab
Method: single particle / : Kowal J, Yu Q, Ni D, Stahlberg H, Tajkhorshid E, Altmann KH, Locher KP, Manolaridis I, Jackson SM, Taylor NMI, Zechner M

EMDB-18330:
ABCG2 in complex with MZ82 and 5D3 Fab
Method: single particle / : Yu Q, Kowal J, Ni D, Stahlberg H, Tajkhorshid E, Altmann KH, Locher KP

PDB-8pxo:
ABCG2 in complex with AZ99 and 5D3 Fab
Method: single particle / : Yu Q, Kowal J, Tajkhorshid E, Altmann KH, Locher KP

PDB-8py4:
ABCG2 in complex with ko143 and 5D3 Fab
Method: single particle / : Yu Q, Kowal J, Tajkhorshid E, Altmann KH, Locher KP

PDB-8q7b:
ABCG2 in complex with MZ29 and 5D3 Fab
Method: single particle / : Kowal J, Yu Q, Ni D, Stahlberg H, Tajkhorshid E, Altmann KH, Locher KP, Manolaridis I, Jackson SM, Taylor NMI, Zechner M

PDB-8qcm:
ABCG2 in complex with MZ82 and 5D3 Fab
Method: single particle / : Yu Q, Kowal J, Ni D, Stahlberg H, Tajkhorshid E, Altmann KH, Locher KP

EMDB-18342:
E. coli DNA gyrase bound to a DNA crossover
Method: single particle / : Vayssieres M, Lamour V, Marechal N

EMDB-18565:
E. coli DNA gyrase bound to a DNA crossover
Method: single particle / : Vayssieres M, Lamour V, Marechal N

EMDB-18566:
Focused map of GyrA-CTD and T-segment DNA from the DNA crossover-gyrase complex
Method: single particle / : Vayssieres M, Lamour V, Marechal N

EMDB-18567:
Focused map of GyrA-CTD from DNA crossover-gyrase complex
Method: single particle / : Vayssieres M, Lamour V, Marechal N

EMDB-18603:
E. coli DNA gyrase bound to a linear part of a DNA minicircle
Method: single particle / : Vayssieres M, Lamour V, Marechal N

EMDB-18605:
Asymetric subunit of E. coli DNA gyrase bound to a linear part of a DNA minicircle
Method: single particle / : Vayssieres M, Lamour V, Marechal N

PDB-8qdx:
E. coli DNA gyrase bound to a DNA crossover
Method: single particle / : Vayssieres M, Lamour V

PDB-8qqs:
E. coli DNA gyrase bound to a linear part of a DNA minicircle
Method: single particle / : Vayssieres M, Lamour V

PDB-8qqu:
Asymetric subunit of E. coli DNA gyrase bound to a linear part of a DNA minicircle
Method: single particle / : Vayssieres M, Lamour V

EMDB-17240:
CryoEM structure of glutamate dehydrogenase isoform 2 from Arabidopsis thaliana in apo-form
Method: single particle / : Grzechowiak M, Ruszkowski M

PDB-8own:
CryoEM structure of glutamate dehydrogenase isoform 2 from Arabidopsis thaliana in apo-form
Method: single particle / : Grzechowiak M, Ruszkowski M

EMDB-29357:
Human IMPDH2 mutant - L245P, treated with ATP, IMP, and NAD+; filament assembly interface reconstruction
Method: single particle / : O'Neill AG, Kollman JM

EMDB-29482:
Human IMPDH2 mutant - L245P, treated with GTP, ATP, IMP, and NAD+; filament assembly interface reconstruction
Method: single particle / : O'Neill AG, Kollman JM

EMDB-29848:
Human IMPDH2 mutant - L245P, treated with ATP, IMP, and NAD+; extended filament segment reconstruction
Method: single particle / : O'Neill AG, Kollman JM

EMDB-29863:
Human IMPDH2 mutant - L245P, treated with GTP, ATP, IMP, and NAD+; compressed filament segment reconstruction
Method: single particle / : O'Neill AG, Kollman JM

EMDB-29870:
Human IMPDH2 mutant - L245P, treated with GTP, ATP, IMP, and NAD+; bent filament segment reconstruction
Method: single particle / : O'Neill AG, Kollman JM

PDB-8foz:
Human IMPDH2 mutant - L245P, treated with ATP, IMP, and NAD+; filament assembly interface reconstruction
Method: single particle / : O'Neill AG, Kollman JM

PDB-8fuz:
Human IMPDH2 mutant - L245P, treated with GTP, ATP, IMP, and NAD+; filament assembly interface reconstruction
Method: single particle / : O'Neill AG, Kollman JM

PDB-8g8f:
Human IMPDH2 mutant - L245P, treated with ATP, IMP, and NAD+; extended filament segment reconstruction
Method: single particle / : O'Neill AG, Kollman JM

PDB-8g9b:
Human IMPDH2 mutant - L245P, treated with GTP, ATP, IMP, and NAD+; compressed filament segment reconstruction
Method: single particle / : O'Neill AG, Kollman JM

EMDB-12734:
Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
Method: single particle / : Kratzat H, Czech L

EMDB-12735:
Cryo-EM map of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with GMPPNP-SRP bound
Method: single particle / : Kratzat H, Berninghausen O, Beckmann R

EMDB-13839:
Cryo-EM structure of an Escherichia coli TnaC-stalled FtsQ ribosome-nascent chain complex with GMPPNP-SRP bound
Method: single particle / : Esser HF, Kratzat H, Musial J, Berninghausen O, Beckmann R

EMDB-13840:
Cryo-EM structure of an Escherichia coli TnaC-stalled FtsQ ribosome-nascent chain complex with (p)ppGpp-SRP bound
Method: single particle / : Esser HF, Kratzat H, Musial J, Berninghausen O, Beckmann R

PDB-7o5b:
Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
Method: single particle / : Kratzat H, Czech L, Berninghausen O, Bange G, Beckmann R

EMDB-13020:
CryoEM structure of DNA Polymerase alpha - primase bound to SARS CoV nsp1
Method: single particle / : Kilkenny TJ, Pellegrini L

EMDB-13021:
CryoEM structure of DNA polymerase alpha - primase bound to SARS CoV nsp1 protein
Method: single particle / : Kilkenny ML, Pellegrini L

PDB-7opl:
CryoEM structure of DNA Polymerase alpha - primase bound to SARS CoV nsp1
Method: single particle / : Kilkenny ML, Pellegrini L

EMDB-10619:
CryoEM structure of human CMG bound to ATPgammaS and DNA
Method: single particle / : Rzechorzek NJ, Pellegrini L

EMDB-10620:
CryoEM structure of human CMG bound to ATPgammaS and DNA - MCM2-7 C-tier
Method: single particle / : Rzechorzek NJ, Pellegrini L

EMDB-10621:
CryoEM structure of human CMG bound to AND-1 (CMGA)
Method: single particle / : Rzechorzek NJ, Pellegrini L

PDB-6xtx:
CryoEM structure of human CMG bound to ATPgammaS and DNA
Method: single particle / : Rzechorzek NJ, Pellegrini L

PDB-6xty:
CryoEM structure of human CMG bound to AND-1 (CMGA)
Method: single particle / : Rzechorzek NJ, Pellegrini L, Chirgadze DY, Hardwick SW

PDB-6hij:
Cryo-EM structure of the human ABCG2-MZ29-Fab complex with cholesterol and PE lipids docked
Method: single particle / : Jackson SM, Manolaridis I, Kowal J, Zechner M, Taylor NMI, Bause M, Bauer S, Bartholomaeus R, Stahlberg H, Bernhardt G, Koenig B, Buschauer A, Altmann KH, Locher KP

EMDB-0137:
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome
Method: single particle / : Beckert B, Turk M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more