[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 436 items for (author: yus & e)

EMDB-64386:
Focus-refined map of C. elegans piezo channel
Method: single particle / : Liu Y, Guo YR

EMDB-74451:
Cryo-EM structure of human UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1) in complex with APPB, composite map
Method: single particle / : Kirsh JM, Ochoa JM, Soroush-Pejrimovsky MT, Kaudeer BY, Clemons WM

EMDB-74452:
Cryo-EM structure of Hydrogenivirga sp. MraY in complex with APPB
Method: single particle / : Kaudeer BY, Clemons WM

EMDB-75257:
Cryo-EM structure of human UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1) in complex with APPB, consensus map
Method: single particle / : Kirsh JM, Ochoa JM, Soroush-Pejrimovsky MT, Kaudeer BY, Clemons WM

EMDB-75258:
Cryo-EM structure of human UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1) in complex with APPB, Chain A map
Method: single particle / : Kirsh JM, Ochoa JM, Soroush-Pejrimovsky MT, Kaudeer BY, Clemons WM

EMDB-75259:
Cryo-EM structure of human UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1) in complex with APPB, Chain B map
Method: single particle / : Kirsh JM, Ochoa JM, Soroush-Pejrimovsky MT, Kaudeer BY, Clemons WM

PDB-9znn:
Cryo-EM structure of human UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1) in complex with APPB
Method: single particle / : Kirsh JM, Ochoa JM, Soroush-Pejrimovsky MT, Kaudeer BY, Clemons WM

PDB-9zno:
Cryo-EM structure of Hydrogenivirga sp. MraY in complex with APPB
Method: single particle / : Kaudeer BY, Clemons WM

EMDB-67107:
Cryo-EM structure of the human A2A adenosine receptor in complex with a Fab antibody fragment
Method: single particle / : Miyashita Y, Konno R, Ogasawara S, Okuda Y, Takamuku Y, Moriya T, Saito T, Murata T, Ohara O, Kawashima Y

PDB-9xqb:
Cryo-EM structure of the human A2A adenosine receptor in complex with a Fab antibody fragment
Method: single particle / : Miyashita Y, Konno R, Ogasawara S, Okuda Y, Takamuku Y, Moriya T, Saito T, Murata T, Ohara O, Kawashima Y

EMDB-64384:
Structure of C. elegans piezo channel isoform k
Method: single particle / : Liu Y, Guo YR

EMDB-64385:
Structure of C. elegans piezo channel
Method: single particle / : Liu Y, Guo YR

PDB-9uox:
Structure of C. elegans piezo channel isoform k
Method: single particle / : Liu Y, Guo YR

PDB-9uoy:
Structure of C. elegans piezo channel
Method: single particle / : Liu Y, Guo YR

EMDB-66703:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66704:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66705:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66706:
Cryo-EM structure of Sup35NM fibril formed at 4 degrees (Sc4)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66707:
Cryo-EM structure of Sup35NM fibril formed at 37 degrees (Sc37)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66708:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbk:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbl:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbm:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbn:
Cryo-EM structure of Sup35NM fibril formed at 4 degrees (Sc4)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbo:
Cryo-EM structure of Sup35NM fibril formed at 37 degrees (Sc37)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbp:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-49708:
cryo-EM structure of broad betacoronavirus binding antibody 1871 in complex with OC43 S2 subunit
Method: single particle / : Muthuraman K, Jackman MJ, Julien JP

PDB-9nqz:
cryo-EM structure of broad betacoronavirus binding antibody 1871 in complex with OC43 S2 subunit
Method: single particle / : Muthuraman K, Jackman MJ, Julien JP

EMDB-47447:
Glucagon Like Peptide Receptor-1 (GLP1R) A316T mutant with GLP-1 peptide. Dominant negative Gs complex.
Method: single particle / : Deane-Alder K, Belousoff MJ, Wootten DL

PDB-9e2a:
Glucagon Like Peptide Receptor-1 (GLP1R) A316T mutant with GLP-1 peptide. Dominant negative Gs complex.
Method: single particle / : Deane-Alder K, Belousoff MJ, Wootten DL

EMDB-64554:
human mitoribosome trapped by retapamulin
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-64899:
human mitoirbosome trapped by retapamulin, global map
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-64900:
human mitoirbosome trapped by retapamulin, focused map
Method: single particle / : Ando Y, Nureki O, Itoh Y

PDB-9uwh:
human mitoribosome trapped by retapamulin
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-60263:
Cryo-EM structure of R-eLACCO2 in the lactate-bound state
Method: single particle / : Kamijo Y, Kusakizako T, Nureki O, Campbell RE, Nasu Y

PDB-8zmz:
Cryo-EM structure of R-eLACCO2 in the lactate-bound state
Method: single particle / : Kamijo Y, Kusakizako T, Nureki O, Campbell RE, Nasu Y

EMDB-54522:
C. elegans in situ Gap Junction class 1
Method: subtomogram averaging / : Rosenkranz N, Gottschalk A

EMDB-54525:
in situ Gap Junction C. elegans Class 2
Method: subtomogram averaging / : Rosenkranz N, Gottschalk A

EMDB-54526:
in situ C. elegans capped gap junction
Method: subtomogram averaging / : Rosenkranz N, Gottschalk A

EMDB-55045:
Capped GJ with additional cytosolic Density
Method: subtomogram averaging / : Rosenkranz N, Gottschalk A

EMDB-63603:
Cryo-EM structure of Rc-o319 RBD/R. cornutus ACE2 complex
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

EMDB-65045:
Cryo-EM Structure of Rc-o319 Ectodomain trimer
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

PDB-9m3f:
Cryo-EM structure of Rc-o319 RBD/R. cornutus ACE2 complex
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

PDB-9vg7:
Cryo-EM Structure of Rc-o319 Ectodomain trimer
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

EMDB-62143:
SARS-CoV-2 related bat coronavirus BANAL-52 spike in the locked state
Method: single particle / : Li QQ, Cai X, Li XN, Zhang YB, Li R, Kang ZR, Wan DD, Wang JX, Yang JX, Shi JX, Jin SL, Peng Y, Zang N, Xie ZK, Wan YS, Shang J

PDB-9k6z:
SARS-CoV-2 related bat coronavirus BANAL-52 spike in the locked state
Method: single particle / : Li QQ, Cai X, Li XN, Zhang YB, Li R, Kang ZR, Wan DD, Wang JX, Yang JX, Shi JX, Jin SL, Peng Y, Zang N, Xie ZK, Wan YS, Shang J

EMDB-62145:
SARS-CoV-2 related bat coronavirus BANAL-103 spike in the closed state
Method: single particle / : Qingqing L, Xiao C, Xiaoning L, Yibing Z, Ru L, Zirui K, Didi W, Jiaxu W, Lili L, Junxia Y, Jianxiang S, Shuiling J, Ying P, Na Z, Yushun W, Jian S

PDB-9k75:
SARS-CoV-2 related bat coronavirus BANAL-103 spike in the closed state
Method: single particle / : Qingqing L, Xiao C, Xiaoning L, Yibing Z, Ru L, Zirui K, Didi W, Jiaxu W, Lili L, Junxia Y, Jianxiang S, Shuiling J, Ying P, Na Z, Yushun W, Jian S

EMDB-49728:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

PDB-9nrc:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more