[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 422 items for (author: yus & e)

EMDB-64384:
Structure of C. elegans piezo channel isoform k
Method: single particle / : Liu Y, Guo YR

EMDB-64385:
Structure of C. elegans piezo channel
Method: single particle / : Liu Y, Guo YR

PDB-9uox:
Structure of C. elegans piezo channel isoform k
Method: single particle / : Liu Y, Guo YR

PDB-9uoy:
Structure of C. elegans piezo channel
Method: single particle / : Liu Y, Guo YR

EMDB-66703:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66704:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66705:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66706:
Cryo-EM structure of Sup35NM fibril formed at 4 degrees (Sc4)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66707:
Cryo-EM structure of Sup35NM fibril formed at 37 degrees (Sc37)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66708:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbk:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbl:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbm:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbn:
Cryo-EM structure of Sup35NM fibril formed at 4 degrees (Sc4)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbo:
Cryo-EM structure of Sup35NM fibril formed at 37 degrees (Sc37)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbp:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-49708:
cryo-EM structure of broad betacoronavirus binding antibody 1871 in complex with OC43 S2 subunit
Method: single particle / : Muthuraman K, Jackman MJ, Julien JP

PDB-9nqz:
cryo-EM structure of broad betacoronavirus binding antibody 1871 in complex with OC43 S2 subunit
Method: single particle / : Muthuraman K, Jackman MJ, Julien JP

EMDB-64554:
human mitoribosome trapped by retapamulin
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-64899:
human mitoirbosome trapped by retapamulin, global map
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-64900:
human mitoirbosome trapped by retapamulin, focused map
Method: single particle / : Ando Y, Nureki O, Itoh Y

PDB-9uwh:
human mitoribosome trapped by retapamulin
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-60263:
Cryo-EM structure of R-eLACCO2 in the lactate-bound state
Method: single particle / : Kamijo Y, Kusakizako T, Nureki O, Campbell RE, Nasu Y

PDB-8zmz:
Cryo-EM structure of R-eLACCO2 in the lactate-bound state
Method: single particle / : Kamijo Y, Kusakizako T, Nureki O, Campbell RE, Nasu Y

EMDB-54522:
C. elegans in situ Gap Junction class 1
Method: subtomogram averaging / : Rosenkranz N, Gottschalk A

EMDB-54525:
in situ Gap Junction C. elegans Class 2
Method: subtomogram averaging / : Rosenkranz N, Gottschalk A

EMDB-54526:
in situ C. elegans capped gap junction
Method: subtomogram averaging / : Rosenkranz N, Gottschalk A

EMDB-55045:
Capped GJ with additional cytosolic Density
Method: subtomogram averaging / : Rosenkranz N, Gottschalk A

EMDB-63603:
Cryo-EM structure of Rc-o319 RBD/R. cornutus ACE2 complex
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

EMDB-65045:
Cryo-EM Structure of Rc-o319 Ectodomain trimer
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

PDB-9m3f:
Cryo-EM structure of Rc-o319 RBD/R. cornutus ACE2 complex
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

PDB-9vg7:
Cryo-EM Structure of Rc-o319 Ectodomain trimer
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

EMDB-62145:
SARS-CoV-2 related bat coronavirus BANAL-103 spike in the closed state
Method: single particle / : Qingqing L, Xiao C, Xiaoning L, Yibing Z, Ru L, Zirui K, Didi W, Jiaxu W, Lili L, Junxia Y, Jianxiang S, Shuiling J, Ying P, Na Z, Yushun W, Jian S

PDB-9k75:
SARS-CoV-2 related bat coronavirus BANAL-103 spike in the closed state
Method: single particle / : Qingqing L, Xiao C, Xiaoning L, Yibing Z, Ru L, Zirui K, Didi W, Jiaxu W, Lili L, Junxia Y, Jianxiang S, Shuiling J, Ying P, Na Z, Yushun W, Jian S

EMDB-49728:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

PDB-9nrc:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

EMDB-60724:
Cryo-EM structure of the tetrameric DRT9-ncRNA complex
Method: single particle / : Zhang JT, Song XY, Wei XY, Jia N

EMDB-60725:
Cryo-EM structure of the hexameric DRT9-ncRNA complex
Method: single particle / : Zhang JT, Song XY, Xia YS, Liu YJ, Jia N

PDB-9ioa:
Cryo-EM structure of the tetrameric DRT9-ncRNA complex
Method: single particle / : Zhang JT, Song XY, Wei XY, Jia N

PDB-9iob:
Cryo-EM structure of the hexameric DRT9-ncRNA complex
Method: single particle / : Zhang JT, Song XY, Xia YS, Liu YJ, Jia N

EMDB-50957:
Cryo-EM map of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
Method: single particle / : Kolosova O, Zgadzay Y, Stetsenko A, Atamas A, Jenner LB, Guskov A, Yusupov M

EMDB-50990:
Cryo-EM map of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) shows strong density for the A site tRNA
Method: single particle / : Kolosova O, Zgadzay Y, Jenner LB, Guskov A, Yusupov M

EMDB-51103:
Cryo-EM map of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Method: single particle / : Kolosova O, Zgadzay Y, Jenner LB, Guskov A, Yusupov M

PDB-9g1z:
Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
Method: single particle / : Kolosova O, Zgadzay Y, Stetsenko A, Atamas A, Jenner LB, Guskov A, Yusupov M

PDB-9g30:
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) shows strong density for the A site tRNA
Method: single particle / : Kolosova O, Zgadzay Y, Jenner LB, Guskov A, Yusupov M

PDB-9g6j:
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Method: single particle / : Kolosova O, Zgadzay Y, Jenner LB, Guskov A, Yusupov M

EMDB-50913:
Structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50914:
Structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50915:
Consensus refinement of the complex between human RNF213 and the secreted effector IpaH1.4 from Shigella flexneri
Method: single particle / : Nadenova K, Randow F

EMDB-50916:
Local refinement of the RNF213 CBM domain in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more