[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,700 items for (author: yu & hy)

EMDB-71916:
Menthol-bound mouse TRPM8 in complex with AITC and PIP2 in a closed (C1M') state
Method: single particle / : Lee HJ, Lee SY

EMDB-71917:
Menthol-bound mouse TRPM8-I846V in complex with PIP2 in an intermediate (C2M, 20C) state
Method: single particle / : Lee HJ, Lee SY

EMDB-71918:
The pre-open state (pre-OM, 20C), menthol-bound mouse TRPM8-I846V in complex with AITC and PIP2
Method: single particle / : Lee HJ, Lee SY

EMDB-71919:
AITC- and PIP2-bound mouse TRPM8 in a closed (C1A) state
Method: single particle / : Lee HJ, Lee SY

EMDB-72557:
The cold-intermediate state (C2M, 4C), menthol-bound mouse TRPM8-I846V in complex with AITC and PIP2
Method: single particle / : Lee HJ, Lee SY

EMDB-72558:
The cold-open state (OM, 4C), menthol-bound mouse TRPM8-I846V in complex with AITC and PIP2
Method: single particle / : Lee HJ, Lee SY

EMDB-74963:
Menthol-and PIP2-bound mouse TRPM8 in a closed (C1M) state
Method: single particle / : Lee HJ, Lee SY

PDB-9pwe:
Menthol-bound mouse TRPM8 in complex with AITC and PIP2 in a closed (C1M') state
Method: single particle / : Lee HJ, Lee SY

PDB-9pwf:
Menthol-bound mouse TRPM8-I846V in complex with PIP2 in an intermediate (C2M, 20C) state
Method: single particle / : Lee HJ, Lee SY

PDB-9pwg:
The pre-open state (pre-OM, 20C), menthol-bound mouse TRPM8-I846V in complex with AITC and PIP2
Method: single particle / : Lee HJ, Lee SY

PDB-9pwh:
AITC- and PIP2-bound mouse TRPM8 in a closed (C1A) state
Method: single particle / : Lee HJ, Lee SY

PDB-9y69:
The cold-intermediate state (C2M, 4C), menthol-bound mouse TRPM8-I846V in complex with AITC and PIP2
Method: single particle / : Lee HJ, Lee SY

PDB-9y6a:
The cold-open state (OM, 4C), menthol-bound mouse TRPM8-I846V in complex with AITC and PIP2
Method: single particle / : Lee HJ, Lee SY

PDB-9zyr:
Menthol-and PIP2-bound mouse TRPM8 in a closed (C1M) state
Method: single particle / : Lee HJ, Lee SY

EMDB-56367:
Cryo-electron tomogram acquired on a cryo-FIB lamella of two adjacent NIH 3T3 cells.
Method: electron tomography / : Gerard SF, Cheng DCW, Toro-Nahuelpan M, Mahamid J, Diz-Munoz A

EMDB-66538:
Structure of the old Killifish Ribosome (Consensus map)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66539:
Structure of the old Killifish Ribosome (Small subunit focus-refined)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66540:
Structure of the old Killifish Ribosome (head focus-refined)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66541:
Structure of the old Killifish Ribosome (head focus-refined with partial mask)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66542:
Structure of the old Killifish Ribosome (Composite map)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66543:
Structure of the old Killifish Proteasome
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66546:
Structure of the young Killifish Ribosome (Consensus map)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66547:
Structure of the young Killifish Ribosome (small subunit focus-refined)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66548:
Structure of the young Killifish Ribosome (head focus-refined)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66549:
Structure of the young Killifish Ribosome (head focus-refined with partial mask)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-66550:
Structure of the young Killifish Ribosome (Composite map)
Method: single particle / : Kim J, Song JJ, Kim Y

EMDB-64407:
Cryo-EM structure of the ZQ16-bound GPR84 receptor-Gi complex
Method: single particle / : Choi MK, Cho HS

EMDB-64807:
Cryo-EM structure of the GLPG1205-bound GPR84 receptor
Method: single particle / : Choi MK, Cho HS

PDB-9upy:
Cryo-EM structure of the ZQ16-bound GPR84 receptor-Gi complex
Method: single particle / : Choi MK, Cho HS

PDB-9v6t:
Cryo-EM structure of the GLPG1205-bound GPR84 receptor
Method: single particle / : Choi MK, Cho HS

EMDB-66714:
BAM-SurA complex (P1-visible)
Method: single particle / : Kohga H, Miyazaki R, Tsukazaki T

EMDB-66821:
BAM-SurA complex (P2-visible 2)
Method: single particle / : Kohga H, Miyazaki R, Tsukazaki T

EMDB-66834:
BAM-SurA complex (P2-visible 1)
Method: single particle / : Kohga H, Miyazaki R, Nugraha Y, Tsukazaki T

EMDB-69488:
BAM-SurA complex (P1_P2-visible 1)
Method: single particle / : Kohga H, Miyazaki R, Nugraha Y, Tsukazaki T

EMDB-69496:
BAM-SurA complex (P1_P2-visible 2)
Method: single particle / : Kohga H, Miyazaki R, Tsukazaki T

EMDB-80076:
BAM-SurA complex (Core only)
Method: single particle / : Kohga H, Miyazaki R, Tsukazaki T

EMDB-66860:
Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with CS-42 Fab (local refinement of RBD and Fv)
Method: single particle / : Kim UJ, Wang DM, Yoon GY, Cho HS

EMDB-66861:
Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with SR-23 Fab (local refinement of RBD and Fv)
Method: single particle / : Kim UJ, Wang DM, Yoon GY, Cho HS

PDB-9xgw:
Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with CS-42 Fab (local refinement of RBD and Fv)
Method: single particle / : Kim UJ, Wang DM, Yoon GY, Cho HS

PDB-9xgx:
Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with SR-23 Fab (local refinement of RBD and Fv)
Method: single particle / : Kim UJ, Wang DM, Yoon GY, Cho HS

EMDB-49747:
MPXV replisome bound to ssDNA
Method: single particle / : Yu Z, Abraham J

EMDB-75504:
MPXV replisome bound to forked DNA
Method: single particle / : Yu Z, Abraham J

EMDB-76148:
MPXV polymerase-E5 primase core complex
Method: single particle / : Yu Z, Abarham J

PDB-10wp:
MPXV replisome bound to forked DNA
Method: single particle / : Yu Z, Abraham J

PDB-11wz:
MPXV polymerase-E5 primase core complex
Method: single particle / : Yu Z, Abarham J

PDB-9nsp:
MPXV replisome bound to ssDNA
Method: single particle / : Yu Z, Abraham J

EMDB-74516:
E. coli RNA polymerase elongation complex containing the unnatural dZ:PTP base pair in a trigger-loop-closed conformation
Method: single particle / : Li Q, Benner SA, Wang D

PDB-9zp4:
E. coli RNA polymerase elongation complex containing the unnatural dZ:PTP base pair in a trigger-loop-closed conformation
Method: single particle / : Li Q, Benner SA, Wang D

EMDB-68393:
Cryo-EM Structure of a 24mer MucD cage
Method: single particle / : Jiang YJ, Gao YG

EMDB-68645:
Client peptide-bound structure of a MucD trimer within a 24mer cage
Method: single particle / : Jiang YJ, Gao YG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more