[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 234 items for (author: yu & cm)

EMDB-74534:
CNGA1 channel closed state in nanodisc cGMP-free
Method: single particle / : Park T, Nimigean CM

EMDB-74535:
CNGA1 channel intermediate state in nanodisc cGMP-bound
Method: single particle / : Park T, Nimigean CM

EMDB-74536:
CNGA1 channel open state in nanodisc cGMP-bound
Method: single particle / : Park T, Nimigean CM

EMDB-74537:
CNGA1 channel closed state in nanodisc with brain PIP2 cGMP-free
Method: single particle / : Park T, Nimigean CM

EMDB-74538:
CNGA1 channel intermediate state in nanodisc with brain PIP2 cGMP-bound
Method: single particle / : Park T, Nimigean CM

EMDB-74539:
CNGA1 channel closed state in nanodisc with diC8-PIP2 cGMP-free
Method: single particle / : Park T, Nimigean CM

EMDB-74540:
CNGA1 channel intermediate state in nanodisc with diC8-PIP2 cGMP-bound
Method: single particle / : Park T, Nimigean CM

EMDB-52445:
Cryo-EM structure of human separase-SCC1 (1-631) fusion protein
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-70318:
PV2-10D2 Complex
Method: single particle / : Waddey BT, Hafenstein SL

EMDB-70320:
SIPV3-2E1 Complex
Method: single particle / : Waddey BT, Hafenstein SL

EMDB-70339:
SIPV3-6B5 Complex
Method: single particle / : Waddey BT, Hafenstein SL

EMDB-70392:
SIPV1-5E12 Complex
Method: single particle / : Waddey BT, Hafenstein SL

EMDB-67283:
C1 Symmetry of DNA tesseract
Method: single particle / : Shiu SCC

EMDB-67284:
Octahedral Symmetry of DNA Tesseract
Method: single particle / : Shiu SCC

EMDB-48922:
Endogenous Pfs230D13-14 in complex with Pfs48/45 bound to anti-Pfs48/45 Fabs RUPA-71 and RUPA-44
Method: single particle / : Hailemariam S, Heide F, Bekkering E, Ivanochko D, Yoo R, Julien JP

EMDB-48921:
Endogenous Pfs230D1-6 in complex with RUPA-97, LMIV230-01, and 2A2 Fab domains
Method: single particle / : Heide F, Yoo R, Ivanochko D, Hailemariam S, Bekkering E, Julien JP

EMDB-48924:
Endogenous Pfs230D9-14 in complex with Pfs48/45
Method: single particle / : Heide F, Ivanochko D, Bekkering E, Yoo R, Hailemariam S, Julien JP

EMDB-48941:
Endogenous Pfs230D7-8 in complex with 18F25
Method: single particle / : Jackman JJ, Yoo R, Ivanochko D, Hailemariam S, Bekkering E, Julien JP

EMDB-45224:
Cryo EM structure of DCAF2
Method: single particle / : McMahon EJ, Wang W

EMDB-45225:
Cryo EM structure of DCAF2:Compound 1 complex
Method: single particle / : McMahon EJ, Wang W

EMDB-45226:
Cryo EM structure of a DCAF2:degrader:BRD4 ternary complex
Method: single particle / : McMahon EJ, Wang W

PDB-9c5t:
Cryo EM structure of DCAF2
Method: single particle / : McMahon EJ, Wang W

PDB-9c5u:
Cryo EM structure of DCAF2:Compound 1 complex
Method: single particle / : McMahon EJ, Wang W

PDB-9c5v:
Cryo EM structure of a DCAF2:degrader:BRD4 ternary complex
Method: single particle / : McMahon EJ, Wang W

EMDB-47110:
Cryo-EM structure of a double-loaded SUMO E1-E2-SUMO1 complex.
Method: single particle / : Jia L, Nayak D, Ruben EA, Nayak A, Wasmuth EV, Olsen SK

EMDB-47127:
Cryo-EM structure of a SUMO E1-E2-SUMO1 complex.
Method: single particle / : Jia L, Nayak D, Ruben EA, Nayak A, Wasmuth EV, Olsen SK

EMDB-52288:
Cryo-EM structure of apo human separase with the mutation C2029S
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-52290:
Cryo-EM structure of apo human separase
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-52291:
Focus-refined map (mask 1) of human separase bound to SCC1 (310-550 aa) and SA2
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-52294:
Focus-refined map (mask 2) of human separase bound to SCC1 (310-550 aa) and SA2
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-52295:
Consensus map of human separase bound to SCC1 (310-550 aa) and SA2
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-52297:
Cryo-EM structure of human separase bound to SCC1 (310-550 aa) and SA2
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-52298:
Cryo-EM structure of SA2-SCC1 complex at 2.9 angstrom
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-52300:
Focus-refined map of human separase bound to SCC1 (310-550 aa) with a mask on TPR-like domain and SPD
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-52301:
Focus-refined map of human separase bound to SCC1 (310-550 aa) with a mask on HEAT-repeat domain
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-52302:
Consensus map of human separase bound to SCC1 (310-550 aa)
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-52303:
Cryo-EM structure of human separase bound to SCC1 (310-550 aa)
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-52306:
Cryo-EM structure of human separase bound to phosphorylated SCC1 (310-550 aa)
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-52307:
Cryo-EM structure of human separase bound to phosphorylated SCC1 (100-320 aa)
Method: single particle / : Yu J, Schmidt S, Botto M, Boland A

EMDB-62301:
Cryo-EM structure of AcrB in vesicles
Method: single particle / : Liu H, Dang S

EMDB-63981:
Cryo-EM structure of complex III2 of mammalian respiratory supercomplex in vesicles
Method: single particle / : Liu H, Dang S

EMDB-46597:
Human Sec61 complex inhibited by KZR-261
Method: single particle / : Park E, Wang L

PDB-9d6l:
Human Sec61 complex inhibited by KZR-261
Method: single particle / : Park E, Wang L

EMDB-52520:
Pre-clinical characterization of novel multi-client inhibitors of Sec61 with broad anti-tumor activity
Method: single particle / : Shahid R, Paavilainen VO

PDB-9hz5:
Pre-clinical characterization of novel multi-client inhibitors of Sec61 with broad anti-tumor activity
Method: single particle / : Shahid R, Paavilainen VO

EMDB-46598:
Human-yeast chimeric Sec complex bound to KZR-261 inhibitor
Method: single particle / : Park E, Wang L

EMDB-44380:
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

PDB-9b9e:
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-44915:
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Method: single particle / : Haile M, Anton L, Ho CM

EMDB-44916:
Single particle cryoEM structure of the Pf80S ribosome in the POST state (nrt with P- and E-site tRNA)
Method: single particle / : Anton L, Haile M, Ho CM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more