[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 348 items for (author: young & id)

EMDB-43813:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)

EMDB-43842:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)

PDB-9asd:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)

PDB-9au2:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)

EMDB-36488:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Composite map)

EMDB-37212:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Receptor original map)

EMDB-37214:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Ligand/CCL7 focused map)

PDB-8jps:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Composite map)

EMDB-43435:
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery

EMDB-43436:
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery

EMDB-43437:
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery

PDB-8vq9:
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery

PDB-8vqa:
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery

PDB-8vqb:
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery

EMDB-37069:
Cryo-EM structure of human TMEM87A A308M

PDB-8kb4:
Cryo-EM structure of human TMEM87A A308M

EMDB-41107:
CryoEM structure of TR-TRAP

PDB-8t9d:
CryoEM structure of TR-TRAP

EMDB-41569:
Cryo-EM structure of HmAb64 scFv in complex with CNE40 SOSIP trimer

PDB-8tr3:
Cryo-EM structure of HmAb64 scFv in complex with CNE40 SOSIP trimer

EMDB-40968:
Atomic model of the mammalian Mediator complex with MED26 subunit

EMDB-40972:
CryoEM map of TR-TRAP

EMDB-40975:
CryoEM map of mouse mediator complex with alternate conformation CKM module

PDB-8t1i:
Atomic model of the mammalian Mediator complex with MED26 subunit

EMDB-41639:
Langya henipavirus fusion protein in postfusion state

EMDB-41640:
Langya henipavirus fusion protein in prefusion state

EMDB-41641:
Langya henipavirus postfusion F protein in complex with the 4G5 Fab, local refinement of the viral membrane distal region

EMDB-41642:
Langya henipavirus postfusion F protein in complex with 4G5 Fab, local refinement of the viral membrane proximal region

EMDB-41644:
Langya henipavirus postfusion fusion protein in complex with 4G5 Fab (global refinement)

PDB-8tve:
Langya henipavirus fusion protein in postfusion state

PDB-8tvf:
Langya henipavirus fusion protein in prefusion state

PDB-8tvg:
Langya henipavirus postfusion F protein in complex with the 4G5 Fab, local refinement of the viral membrane distal region

PDB-8tvh:
Langya henipavirus postfusion F protein in complex with 4G5 Fab, local refinement of the viral membrane proximal region

EMDB-41636:
Ghanaian virus fusion glycoprotein (GhV F)

EMDB-41643:
Langya Virus G glycoprotein (LayV G) with stabilizing mutations

EMDB-43593:
Langya Virus attachment (G) glycoprotein with K85L/L86K mutation

PDB-8tvb:
Ghanaian virus fusion glycoprotein (GhV F)

PDB-8tvi:
Langya Virus G glycoprotein (LayV G) with stabilizing mutations

PDB-8vwp:
Langya Virus attachment (G) glycoprotein with K85L/L86K mutation

EMDB-43736:
Umb1 umbrella toxin particle

EMDB-43737:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)

PDB-8w20:
Umb1 umbrella toxin particle

PDB-8w22:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)

EMDB-43224:
Structure of the HKU1 RBD bound to the human TMPRSS2 receptor

PDB-8vgt:
Structure of the HKU1 RBD bound to the human TMPRSS2 receptor

EMDB-34998:
Cryo-EM structure of human TMEM87A, PE-bound

EMDB-35017:
Cryo-EM structure of human TMEM87A, gluconate-bound

PDB-8hsi:
Cryo-EM structure of human TMEM87A, PE-bound

PDB-8htt:
Cryo-EM structure of human TMEM87A, gluconate-bound

EMDB-42481:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-1heptad-I53_dn5

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more