[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,356 items for (author: ye & rd)

EMDB-54920:
Cryo-EM structure of the catalytic core of human telomerase at the initiation state of the repeat addition cycle
Method: single particle / : Balch S, Franco-Echevarria E, Ghanim GE, Kretsch RC, Das R, Nguyen THD, Yu H, Sigurdur TR, Ding Y

EMDB-54921:
Cryo-EM structure of the catalytic core of human telomerase at the elongation state of the repeat addition cycle
Method: single particle / : Balch S, Franco-Echevarria E, Ghanim GE, Kretsch RC, Das R, Nguyen THD, Yu H, Sigurdur TR, Ding Y

EMDB-54922:
Cryo-EM structure of the catalytic core of human telomerase at the pre-termination state of the repeat addition cycle
Method: single particle / : Balch S, Franco-Echevarria E, Ghanim GE, Kretsch RC, Das R, Nguyen THD, Yu H, Sigurdur TR, Ding Y

EMDB-70338:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

EMDB-71715:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71727:
West Nile virus E protein
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71728:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9od2:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

PDB-9pl9:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9pm6:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-52336:
Docedameric RuvBL1/RuvBL2
Method: single particle / : Santo PE, Plisson-Chastang C

EMDB-48239:
Motor domain with Apo AAA1 and ADP AAA3 from yeast full-length dynein-1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

EMDB-48240:
Motor domain with ADP AAA1 and ADP AAA3 from yeast full-length dynein-1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

EMDB-48241:
Motor domain alone with Apo AAA1 and ADP AAA3 from yeast full-length dynein-1 and Pac1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

EMDB-48242:
Motor domain-Pac1 complex with ADP AAA1 and Apo AAA3 from yeast full-length dynein-1 and Pac1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

PDB-9mfv:
Motor domain with Apo AAA1 and ADP AAA3 from yeast full-length dynein-1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

PDB-9mfw:
Motor domain with ADP AAA1 and ADP AAA3 from yeast full-length dynein-1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

PDB-9mfx:
Motor domain alone with Apo AAA1 and ADP AAA3 from yeast full-length dynein-1 and Pac1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

PDB-9mfy:
Motor domain-Pac1 complex with ADP AAA1 and Apo AAA3 from yeast full-length dynein-1 and Pac1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

EMDB-66703:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66704:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66705:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66706:
Cryo-EM structure of Sup35NM fibril formed at 4 degrees (Sc4)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66707:
Cryo-EM structure of Sup35NM fibril formed at 37 degrees (Sc37)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66708:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbk:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbl:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbm:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbn:
Cryo-EM structure of Sup35NM fibril formed at 4 degrees (Sc4)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbo:
Cryo-EM structure of Sup35NM fibril formed at 37 degrees (Sc37)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbp:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-73233:
Tra1 and core modules including core tip of ctSAGA complex
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73234:
Tra1 and Core Module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73235:
Histone Acetyl Transferase (HAT) module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73236:
Tra1, Core and minimal HAT modules of ctSAGA, composite.
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73237:
Focused map of HAT module Bromodomain region
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73238:
Focused map of Tra1 module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73239:
Focused map of Tra1 module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73240:
Focused map of Tra1 module of ctSAGA complex
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73241:
Focused map of core module of ctSAGA complex
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73242:
Focused map of core module of ctSAGA complex
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Kornberg RD

EMDB-73243:
Focused map of core module of ctSAGA complex
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73261:
Tra1 module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73269:
Core module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-49486:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9njl:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-53068:
Cryo-EM map of P. furiosus 70S grown at 95 degrees
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53069:
Cryo-EM map of P. furiosus 70S grown at 95 degC, focused on the lsu
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53070:
Cryo-EM map of P. furiosus 70S grown at 95 degC, focused on the ssu body
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53071:
Cryo-EM map of P. furiosus 70S grown at 95 degC, focused on the ssu head
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more