[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,515 items for (author: ye & rd)

EMDB-74143:
The sharpened consensus map for UL9-ICP8-DNA complex
Method: single particle / : Baranovskiy AG, Morstadt LM, Romero EE, Babayeva ND, Tahirov TH

EMDB-74144:
The focused map for ICP8-DNA
Method: single particle / : Baranovskiy AG, Morstadt LM, Romero EE, Babayeva ND, Tahirov TH

EMDB-74145:
The focused map for UL9-DNA
Method: single particle / : Baranovskiy AG, Morstadt LM, Romero EE, Babayeva ND, Tahirov TH

EMDB-41497:
Structure of the H-lobe of human MED12
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41500:
Structure of the kinase and central lobes of human CDK8 kinase module
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-75881:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of PP7 virus-like-particle without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75882:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of PP7 virus-like-particle with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-74190:
The complex of HSV-1 proteins UL9 and ICP8 with forked DNA
Method: single particle / : Baranovskiy AG, Morstadt LM, Romero EE, Babayeva ND, Tahirov TH

PDB-9zgf:
The complex of HSV-1 proteins UL9 and ICP8 with forked DNA
Method: single particle / : Baranovskiy AG, Morstadt LM, Romero EE, Babayeva ND, Tahirov TH

EMDB-66444:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) in C1 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66445:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkB in C1 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66446:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkA in C1 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66447:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66448:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkB in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66449:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkA in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

PDB-9x0w:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

PDB-9x0x:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkB in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

PDB-9x0y:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkA in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-71616:
Architecture of human Voltage Dependent Anion Channel 1 in nanodiscs
Method: single particle / : Modaresi SM, Degen M, Hiller S

PDB-9pfz:
Architecture of human Voltage Dependent Anion Channel 1 in nanodiscs
Method: single particle / : Modaresi SM, Degen M, Hiller S

EMDB-71658:
Cryo-EM structure of the PGD2-bound prostaglandin D2 receptor (DP1)-Gs complex (Consensus map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, Kim D

EMDB-71659:
Cryo-EM structure of the PGD2-bound prostaglandin D2 receptor (DP1)-Gs complex (Receptor-focused map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, Kim D

EMDB-71660:
Cryo-EM structure of the PGD2-bound prostaglandin D2 receptor (DP1)-Gs complex (G protein-focused map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, Kim D

EMDB-71661:
Cryo-EM structure of the BW245C-bound prostaglandin D2 receptor (DP1)-Gs complex (Consensus map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, Kim D

EMDB-71662:
Cryo-EM structure of the BW245C-bound prostaglandin D2 receptor (DP1)-Gs complex (Receptor-focused map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, kim D

EMDB-71663:
Cryo-EM structure of the BW245C-bound prostaglandin D2 receptor (DP1)-Gs complex (G protein-focused map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW

EMDB-73749:
Cryo-EM structure of KP.3 spike in complex with Nb9B
Method: single particle / : Ye G, Bu F, Liu B, Li F

EMDB-73750:
Structure of KP.3 spike in complex with Nanosota-9B (local refinement)
Method: single particle / : Ye G, Bu F, Liu B, Li F

PDB-9z1m:
Cryo-EM structure of KP.3 spike in complex with Nb9B
Method: single particle / : Ye G, Bu F, Liu B, Li F

PDB-9z1n:
Structure of KP.3 spike in complex with Nanosota-9B (local refinement)
Method: single particle / : Ye G, Bu F, Liu B, Li F

EMDB-53004:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

PDB-9qc6:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

EMDB-71953:
ATTR cardiac amyloid fibrils apex1
Method: helical / : Schaefer JH, Lander GC

EMDB-71960:
ATTR cardiac amyloid fibrils apex2
Method: helical / : Schaefer JH, Lander GC

EMDB-71962:
ATTR V122I cardiac amyloid fibrils
Method: helical / : Schaefer JH, Lander GC

EMDB-73312:
ATTR Collagen VI Cofibrils
Method: single particle / : Schaefer JH, Lander GC

EMDB-73313:
Human Collagen VI microfibril
Method: single particle / : Schaefer JH, Lander GC

PDB-9px6:
ATTR cardiac amyloid fibrils apex1
Method: helical / : Schaefer JH, Lander GC

PDB-9px7:
ATTR cardiac amyloid fibrils apex2
Method: helical / : Schaefer JH, Lander GC

PDB-9px9:
ATTR V122I cardiac amyloid fibrils
Method: helical / : Schaefer JH, Lander GC

EMDB-52603:
CryoEM structure of the Themis:Grb2 complex with bound ProMacrobody 256
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52604:
3D reconstruction of Themis:Grb2:ProMacrobody256 after 3D classification (Class 1)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52605:
3D reconstruction of Themis:Grb2:ProMacrobody256 after 3D classification (Class 2)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52606:
3D reconstruction of Themis:Grb2:ProMacrobody256 after 3D classification (Class 3)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52607:
3D reconstruction of Themis:Grb2:ProMacrobody256 after 3D classification (Class 4)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52608:
CryoEM map of Themis bound to ProMacrobody 256
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52609:
3D reconstruction of Themis:ProMacrobody256 after 3D classification (Class 1)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52610:
3D reconstruction of Themis:ProMacrobody256 after 3D classification (Class 2)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52787:
CryoEM structure of the Themis:Grb2 complex with bound ProMacrobody 256, local refinement
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

PDB-9i3p:
CryoEM structure of the Themis:Grb2 complex with bound ProMacrobody 256
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more