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Showing 1 - 50 of 93 items for (author: yamada & k)

EMDB-62001:
Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

EMDB-62002:
Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

EMDB-62003:
Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

EMDB-62004:
Cryo-EM structure of the NbaCas9-guide RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

PDB-9k2z:
Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

PDB-9k30:
Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

PDB-9k31:
Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

PDB-9k32:
Cryo-EM structure of the NbaCas9-guide RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

EMDB-71751:
Cryo-ET reconstruction of a regenerating axon after axotomy showing branching microtubules (primary mouse thalamus neuronal explant, control)
Method: electron tomography / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71752:
Cryo-ET reconstruction of a regenerating axon after axotomy showing branching microtubules (primary mouse thalamus neuronal explant)
Method: electron tomography / : Taira K, Bodakuntla S, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71753:
Cryo-ET reconstruction of a regenerating axon after axotomy showing polymerizing microtubules (primary mouse thalamus neuronal explant)
Method: electron tomography / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71754:
Cryo-ET reconstruction of a regenerating axon 24 h after axotomy (primary mouse thalamus neuronal explant)
Method: electron tomography / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71755:
Cryo-ET reconstruction of a regenerating axon 24 h after axotomy (primary mouse thalamus neuronal explant)
Method: electron tomography / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71840:
Cryo-ET subtomogram averaging of a stress fiber from a regenerating axon
Method: subtomogram averaging / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-62399:
CryoEM structure of Pleurocybella porrigens lectin (PPL) in complex with GalNAc
Method: single particle / : Ishimoto N, Adachi D, Kawabata H, Park SY, Tame JRH, Kamata K

PDB-9kl3:
CryoEM structure of Pleurocybella porrigens lectin (PPL) in complex with GalNAc
Method: single particle / : Ishimoto N, Adachi D, Kawabata H, Park SY, Tame JRH, Kamata K

EMDB-71750:
In situ microtubule of EpoB-induced regenerating axons
Method: helical / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

PDB-9pnd:
In situ microtubule of EpoB-induced regenerating axons
Method: helical / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-64005:
Iota toxin Ib pore serine-clamp mutant(C1)
Method: single particle / : Ninomiya Y, Yoshida T, Yamada T, Kishikawa J, Tsuge H

EMDB-39544:
Iota toxin Ib pore serine-clamp mutant
Method: single particle / : Ninomiya Y, Yoshida T, Yamada T, Kishikawa J, Tsuge H

PDB-8yrm:
Iota toxin Ib pore serine-clamp mutant
Method: single particle / : Ninomiya Y, Yoshida T, Yamada T, Kishikawa J, Tsuge H

EMDB-39676:
Cryo-EM structure of cylindrical fiber of MyD88 TIR
Method: single particle / : Kasai K, Imamura K, Narita A, Makino F, Miyata T, Kato T, Namba K, Onishi H, Tochio H

EMDB-44013:
F-actin-Talin(R13-DD) complex
Method: helical / : Biertumpfel C, Yamada Y, Mizuno N

EMDB-48238:
F-actin-Talin(R13-DD) complex, half-decorated
Method: helical / : Biertumpfel C, Yamada Y, Mizuno N

EMDB-48243:
F-actin-Talin(R13-DD) complex, single-decorated
Method: helical / : Biertumpfel C, Yamada Y, Mizuno N

PDB-9az6:
F-actin-Talin(R13-DD) complex
Method: helical / : Biertumpfel C, Yamada Y, Mizuno N

EMDB-37355:
Cryo-EM structure of helical filament of MyD88 TIR
Method: single particle / : Kasai K, Imamura K, Narita A, Makino F, Miyata T, Kato T, Namba K, Onishi H, Tochio H

EMDB-27770:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 1
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

EMDB-27771:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 2
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

EMDB-27772:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 3
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

EMDB-27773:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 4
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

EMDB-27774:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 5
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

PDB-8dxn:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 1
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

PDB-8dxo:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 2
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

PDB-8dxp:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 3
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

PDB-8dxq:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 4
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

PDB-8dxr:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 5
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

EMDB-32041:
Complex structure of Clostridioides difficile enzymatic component (CDTa) and binding component (CDTb) pore with short stem
Method: single particle / : Yamada T, Kawamoto A, Yoshida T, Sato Y, Kato T, Tsuge H

EMDB-32043:
Complex structure of Clostridioides difficile enzymatic component (CDTa) and binding component (CDTb) pore with long stem
Method: single particle / : Yamada T, Kawamoto A, Yoshida T, Sato Y, Kato T, Tsuge H

EMDB-33188:
Complex map of Clostridioides difficile enzymatic component (CDTa) and binding component (CDTb) di-heptamer
Method: single particle / : Yamada T, Kawamoto A, Yoshida T, Sato Y, Kato T, Tsuge H

EMDB-34136:
Complex structure of Clostridioides difficile binary toxin folded CDTa-bound CDTb-pore (short).
Method: single particle / : Yamada T, Kawamoto A, Yoshida T, Sato Y, Kato T, Tsuge H

EMDB-34137:
Complex structure of Clostridioides difficile binary toxin unfolded CDTa-bound CDTb-pore (short).
Method: single particle / : Yamada T, Kawamoto A, Yoshida T, Sato Y, Kato T, Tsuge H

PDB-7vnj:
Complex structure of Clostridioides difficile enzymatic component (CDTa) and binding component (CDTb) pore with short stem
Method: single particle / : Yamada T, Kawamoto A, Yoshida T, Sato Y, Kato T, Tsuge H

PDB-7vnn:
Complex structure of Clostridioides difficile enzymatic component (CDTa) and binding component (CDTb) pore with long stem
Method: single particle / : Yamada T, Kawamoto A, Yoshida T, Sato Y, Kato T, Tsuge H

PDB-7yvq:
Complex structure of Clostridioides difficile binary toxin folded CDTa-bound CDTb-pore (short).
Method: single particle / : Yamada T, Kawamoto A, Yoshida T, Sato Y, Kato T, Tsuge H

PDB-7yvs:
Complex structure of Clostridioides difficile binary toxin unfolded CDTa-bound CDTb-pore (short).
Method: single particle / : Yamada T, Kawamoto A, Yoshida T, Sato Y, Kato T, Tsuge H

EMDB-33045:
SARS-CoV-2 spike glycoprotein in complex with neutralizing antibody UT28K
Method: single particle / : Ozawa T, Tani H, Anraku Y, Kita S, Igarashi E, Saga Y, Inasaki N, Kawasuji H, Yamada H, Sasaki S, Someoka M, Sasaki J, Hayakawa Y, Yamamoto Y, Morinaga Y, Kurosawa N, Isobe M, Fukuhara H, Maenaka K, Hashiguchi T, Kishi H, Kitajima I, Saito S, Niimi H

EMDB-31089:
Cryo-EM structure of the octameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
Method: single particle / : Minato T, Teramoto T, Adachi N, Hung NK, Yamada K, Kawasaki M, Akutsu M, Moriya T, Senda T, Ogo S, Kakuta Y, Yoon KS

EMDB-31090:
Cryo-EM structure of the hexameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
Method: single particle / : Minato T, Teramoto T, Adachi N, Hung NK, Yamada K, Kawasaki M, Akutsu M, Moriya T, Senda T, Ogo S, Kakuta Y, Yoon KS

PDB-7eh7:
Cryo-EM structure of the octameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
Method: single particle / : Minato T, Teramoto T, Adachi N, Hung NK, Yamada K, Kawasaki M, Akutsu M, Moriya T, Senda T, Ogo S, Kakuta Y, Yoon KS

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

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