[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,439 items for (author: xue & j)

EMDB-37522:
MPOX E5 hexamer AMP-PNP and ssDNA bound form with clear primase domain
Method: single particle / : Zhang Z, Dong C

EMDB-37523:
MPOX E5 double hexamer ssDNA bound conformation
Method: single particle / : Zhang Z, Dong C

PDB-8wgy:
MPOX E5 hexamer AMP-PNP and ssDNA bound form with clear primase domain
Method: single particle / : Zhang Z, Dong C

PDB-8wgz:
MPOX E5 double hexamer ssDNA bound conformation
Method: single particle / : Zhang Z, Dong C

EMDB-37524:
MPOX E5 hexamer ssDNA and AMP-PNP bound conformation
Method: single particle / : Zhang Z, Dong C

PDB-8wh0:
MPOX E5 hexamer ssDNA and AMP-PNP bound conformation
Method: single particle / : Zhang Z, Dong C

EMDB-39098:
Cryo-electron microscopic structure of an amide hydrolase from Pseudoxanthomonas wuyuanensis
Method: single particle / : Dai LH, Xu YH, Hu YM, Niu D, Yang XC, Shen PP, Li X, Xie ZZ, Li H, Guo RT, Chen CC

PDB-8yag:
Cryo-electron microscopic structure of an amide hydrolase from Pseudoxanthomonas wuyuanensis
Method: single particle / : Dai LH, Xu YH, Hu YM, Niu D, Yang XC, Shen PP, Li X, Xie ZZ, Li H, Guo RT, Chen CC

EMDB-39188:
Cryo-EM structure of human respiratory syncytial virus fusion protein variant
Method: single particle / : Li QM, Su JG, Zhang J, Liang Y, Shao S, Li XY, Zhao ZX

PDB-8ye3:
Cryo-EM structure of human respiratory syncytial virus fusion protein variant
Method: single particle / : Li QM, Su JG, Zhang J, Liang Y, Shao S, Li XY, Zhao ZX

EMDB-37527:
MPOX E5 hexamer apo form
Method: single particle / : Zhang Z, Dong C

EMDB-37528:
MPOX E5 hexamer ssDNA bound apo conformation
Method: single particle / : Zhang Z, Dong C

EMDB-37530:
MPOX E5 hexamer ADP and ssDNA bound and clear primase domain conformation
Method: single particle / : Zhang Z, Dong C

PDB-8wh3:
MPOX E5 hexamer apo form
Method: single particle / : Zhang Z, Dong C

PDB-8wh4:
MPOX E5 hexamer ssDNA bound apo conformation
Method: single particle / : Zhang Z, Dong C

PDB-8wh6:
MPOX E5 hexamer ADP and ssDNA bound and clear primase domain conformation
Method: single particle / : Zhang Z, Dong C

EMDB-39395:
Cryo-EM structure of Hepatitis B virus surface antigen subviral particle with D2 symmetry
Method: single particle / : Wang T, Cao L, Mu A, Wang Q, Rao ZH

EMDB-39396:
Localized reconstruction of Hepatitis B virus surface antigen dimer in the subviral particle with D2 symmetry from dataset A0
Method: single particle / : Wang T, Cao L, Mu A, Wang Q, Rao ZH

EMDB-39397:
Cryo-EM structure of Hepatitis B virus surface antigen subviral particle with D4 symmetry
Method: single particle / : Wang T, Cao L, Mu A, Wang Q, Rao ZH

EMDB-39404:
Localized reconstruction of Hepatitis B virus surface antigen dimer in the subviral particle with D2 symmetry from dataset A
Method: single particle / : Wang T, Cao L, Mu A, Wang Q, Rao ZH

EMDB-60451:
Cryo-EM structure of Hepatitis B virus surface antigen subviral particle (ellipsoidal shape with C1 symmetry)
Method: single particle / : Wang T, Cao L, Mu A, Wang Q, Rao ZH

PDB-8ymj:
Cryo-EM structure of Hepatitis B virus surface antigen subviral particle with D2 symmetry
Method: single particle / : Wang T, Cao L, Mu A, Wang Q, Rao ZH

PDB-8ymk:
Localized reconstruction of Hepatitis B virus surface antigen dimer in the subviral particle with D2 symmetry from dataset A0
Method: single particle / : Wang T, Cao L, Mu A, Wang Q, Rao ZH

EMDB-19907:
CryoEM structure of human full-length alpha1beta3gamma2L GABA(A)R in complex with GABA and puerarin
Method: single particle / : Kasaragod VB, Aricescu AR

PDB-9eqg:
CryoEM structure of human full-length alpha1beta3gamma2L GABA(A)R in complex with GABA and puerarin
Method: single particle / : Kasaragod VB, Aricescu AR

EMDB-39820:
Structure of HIV-1 CH119 SOSIP.664 trimer in complex with CD4 molecules
Method: single particle / : Li D, Wang T

PDB-8z7n:
Structure of HIV-1 CH119 SOSIP.664 trimer in complex with CD4 molecules
Method: single particle / : Li D, Wang T

EMDB-39237:
The pre-fusion structure of baculovirus fusion protein GP64
Method: single particle / : Du D, Guo J, Li S

EMDB-39238:
The early intermediate structure of baculovirus fusion protein GP64
Method: single particle / : Du D, Guo J, Li S

PDB-8yg6:
The pre-fusion structure of baculovirus fusion protein GP64
Method: single particle / : Du D, Guo J, Li S

PDB-8yg8:
The early intermediate structure of baculovirus fusion protein GP64
Method: single particle / : Du D, Guo J, Li S

EMDB-37646:
Fzd4/DEP complex
Method: single particle / : He Y, Qian Y

EMDB-37647:
Fzd4/DEP complex (local refined)
Method: single particle / : He Y, Qian Y

PDB-8wm9:
Fzd4/DEP complex
Method: single particle / : He Y, Qian Y

PDB-8wma:
Fzd4/DEP complex (local refined)
Method: single particle / : He Y, Qian Y

EMDB-37637:
Structural basis for the nucleosome binding and chromatin compaction by the linker histone H5
Method: single particle / : Li WY, Song F, Zhu P

EMDB-37638:
Structural basis for the nucleosome binding and chromatin compaction by the linker histone H5
Method: single particle / : Li WY, Song F, Zhu P

EMDB-38407:
Structural basis for the linker histone H5-nucleosome binding and chromatin compaction
Method: single particle / : Li WY, Song F, Zhu P

PDB-8xjv:
Structural basis for the linker histone H5-nucleosome binding and chromatin compaction
Method: single particle / : Li WY, Song F, Zhu P

EMDB-43996:
Cryo-EM Structure of E.coli produced recombinant N-acetyltransferase 10 (NAT10) in complex with cytidine-acetone-CoA bisubstrate probe
Method: single particle / : Zhou M, Marmorstein R

EMDB-44038:
Cryo-EM Structure of E.coli produced recombinant N-acetyltransferase 10 (NAT10) in complex with cytidine-amide-CoA bisubstrate probe and ADP.
Method: single particle / : Zhou M, Marmorstein R

EMDB-44042:
Cryo-EM Structure of Sf9 produced recombinant N-acetyltransferase 10 (NAT10) in complex with cytidine-amide-CoA bisubstrate probe and ADP/Mg2+.
Method: single particle / : Zhou M, Marmorstein R

PDB-9aym:
Cryo-EM Structure of E.coli produced recombinant N-acetyltransferase 10 (NAT10) in complex with cytidine-acetone-CoA bisubstrate probe
Method: single particle / : Zhou M, Marmorstein R

PDB-9b0e:
Cryo-EM Structure of E.coli produced recombinant N-acetyltransferase 10 (NAT10) in complex with cytidine-amide-CoA bisubstrate probe and ADP
Method: single particle / : Zhou M, Marmorstein R

PDB-9b0i:
Cryo-EM Structure of Sf9 produced recombinant N-acetyltransferase 10 (NAT10) in complex with cytidine-amide-CoA bisubstrate probe and ADP/Mg2+.
Method: single particle / : Zhou M, Marmorstein R

EMDB-60647:
Cryo-EM structure of the human P2X3 receptor-compound 26a complex
Method: single particle / : Kim S, Kim GR, Kim YO, Han X, Nagel J, Kim J, Song DI, Muller CE, Yoon MH, Jin MS, Kim YC

PDB-9ik1:
Cryo-EM structure of the human P2X3 receptor-compound 26a complex
Method: single particle / : Kim S, Kim GR, Kim YO, Han X, Nagel J, Kim J, Song DI, Muller CE, Yoon MH, Jin MS, Kim YC

EMDB-45962:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 5-12-18
Method: single particle / : Sun C, Jiang W

EMDB-45963:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18
Method: single particle / : Sun C, Jiang W

EMDB-45964:
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18, DTT-treated
Method: single particle / : Sun C, Jiang W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more