[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 637 items for (author: xu & rm)

EMDB-61131:
Cryo-EM structure of aPlexinA1-19-43 Fab in complex with PlexinA1 dimer
Method: single particle / : Tian H, Fung CP

PDB-9j4c:
Cryo-EM structure of aPlexinA1-19-43 Fab in complex with PlexinA1 dimer
Method: single particle / : Tian H, Fung CP

EMDB-54480:
Tomogram of unbudded yeast cell overexpressing Ldm1
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54483:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54486:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor (unbudded region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54487:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor(bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54489:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54497:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-72835:
UDPG bound P2Y14 Receptor in complex with Gi
Method: single particle / : Fay JF, Che T

EMDB-72836:
MRS2905 bound P2Y14 Receptor in complex with Gi
Method: single particle / : Fay JF

EMDB-72837:
P2Y14R bound to MRS2905 (local refinement)
Method: single particle / : Fay JF

EMDB-72838:
P2Y14R bound to UDPG (local refinement)
Method: single particle / : Fay JF

PDB-9ydu:
UDPG bound P2Y14 Receptor in complex with Gi
Method: single particle / : Fay JF

PDB-9ydv:
MRS2905 bound P2Y14 Receptor in complex with Gi
Method: single particle / : Fay JF

EMDB-70663:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70666:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9oog:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9oom:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70190:
HIV-1 N332-GT5 SOSIP in complex with mouse polyclonal antibodies (V3-glycan epitope) following mRNA multi antigen prime
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-70192:
HIV-1 N332-GT5 SOSIP in complex with mouse polyclonal antibodies (V3-glycan and gp41-base epitopes) following protein multi antigen prime
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-70664:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9ook:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-62126:
Structure of human LINE-1 ORF2p with endogenous dsDNA and RNA/cDNA hybrid
Method: single particle / : Jin W, Yu C, Xu RM

EMDB-62127:
Structure of human LINE-1 ORF2p with endogenous DNA and RNA/cDNA hybrid bound to dNTP and Mn2+
Method: single particle / : Jin W, Yu C, Xu RM

EMDB-62128:
Structure of full-length human LINE-1 ORF2p with endogenous DNA and RNA/cDNA hybrid
Method: single particle / : Jin W, Yu C, Xu RM

EMDB-72519:
Cryo EM structure of KCa3.1_R355K_I/calmodulin channel in complex with rimtuzalcap
Method: single particle / : Nam YW, Zhang M

EMDB-53880:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (post-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

EMDB-53882:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (pre-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

PDB-9raw:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (post-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

PDB-9rax:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (pre-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

EMDB-48519:
Vitamin K-dependent gamma-carboxylase with Osteocalcin (mutant) and vitamin K hydroquinone and calcium
Method: single particle / : Li W, Liu B, Cao Q

EMDB-48520:
Vitamin K-dependent gamma-carboxylase with Osteocalcin (mutant) and vitamin K hydroquinone
Method: single particle / : Li W, Liu B, Cao Q

EMDB-48522:
Vitamin K-dependent gamma-carboxylase with Osteocalcin and vitamin K hydroquinone
Method: single particle / : Li W, Liu B, Cao Q

PDB-9mqb:
Vitamin K-dependent gamma-carboxylase with Osteocalcin (mutant) and vitamin K hydroquinone and calcium
Method: single particle / : Li W, Liu B, Cao Q

PDB-9mqc:
Vitamin K-dependent gamma-carboxylase with Osteocalcin (mutant) and vitamin K hydroquinone
Method: single particle / : Li W, Liu B, Cao Q

PDB-9mqe:
Vitamin K-dependent gamma-carboxylase with Osteocalcin and vitamin K hydroquinone
Method: single particle / : Li W, Liu B, Cao Q

EMDB-72841:
Cryo EM structure of KCa3.1_R355K_II/calmodulin channel in complex with rimtuzalcap
Method: single particle / : Nam YW, Zhang M

EMDB-70833:
GATOR2 complex bound to arginine sensor CASTOR1
Method: single particle / : Jansen RM, Hurley JH

EMDB-71136:
Focused map GATOR2-CASTOR1 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71137:
Focused map for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71138:
Focused map for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71139:
Focused map for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71140:
Focused map for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71141:
Focused maps for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71142:
Consesus map for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-71143:
Focused map for CASTOR1-GATOR2 complex
Method: single particle / : Jansen RM, Hurley JH

EMDB-45301:
mouse Seipin/Adig complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

EMDB-45302:
mouse Seipin complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

EMDB-48078:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Singapore 2016 HA trimer
Method: single particle / : Gorman J, Kwong PD

PDB-9ei8:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Singapore 2016 HA trimer
Method: single particle / : Gorman J, Kwong PD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more