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Structure paper

TitleNeutralization of SARS-CoV-2 by IgM-14 via Engagement of Two Distinct Spike Epitopes
Journal, issue, pagesTo Be Published
Publish dateOct 12, 2025 (structure data deposition date)
AuthorsWang Y / Hu Y / Ku Z / Yeung J / Zou J / Woodson M / Prokhorov N / Knyazhanskaya E / Zhao H / Sherman M ...Wang Y / Hu Y / Ku Z / Yeung J / Zou J / Woodson M / Prokhorov N / Knyazhanskaya E / Zhao H / Sherman M / An Z / Carroll S / Shi P-Y / Leiman P / Xie X
External linksSearch PubMed
MethodsEM (single particle)
Resolution3.01 - 4.1 Å
Structure data

73228

9ynr

EMDB-73228, PDB-9ynr:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode I
Method: EM (single particle) / Resolution: 3.55 Å

EMDB-73231: Cryo-EM map of D614G spike, 1-up-RBD
Method: EM (single particle) / Resolution: 3.38 Å

EMDB-73244: SARS-CoV-2 D614G spike, 3-RBD-downn
Method: EM (single particle) / Resolution: 3.32 Å

73245

9ynx

EMDB-73245, PDB-9ynx:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode I, Subgroup I conformation
Method: EM (single particle) / Resolution: 4.1 Å

EMDB-73247: Fab-14/SARS-CoV-2 D614G spike complex, Mode V conformation
Method: EM (single particle) / Resolution: 3.52 Å

73260

9yok

EMDB-73260, PDB-9yok:
Fab-14/SARS-CoV-2 D614G spike complex, Mode I conformation
Method: EM (single particle) / Resolution: 3.56 Å

EMDB-73263: Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup I conformation
Method: EM (single particle) / Resolution: 3.48 Å

EMDB-73265: Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup II conformation
Method: EM (single particle) / Resolution: 3.49 Å

EMDB-73267: Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup III conformation
Method: EM (single particle) / Resolution: 3.57 Å

EMDB-73270: Fab-14/SARS-CoV-2 Omicron BA.1 spike complex
Method: EM (single particle) / Resolution: 3.73 Å

EMDB-73271: SARS-CoV-2 Omicron BA.1 spike, 3-RBD-down
Method: EM (single particle) / Resolution: 3.01 Å

EMDB-73273: SARS-CoV-2 Omicron BA.1 spike, 1-RBD-up
Method: EM (single particle) / Resolution: 3.16 Å

EMDB-73290: Fab-14/SARS-CoV-2 D614G spike complex, Mode III conformation
Method: EM (single particle) / Resolution: 3.47 Å

EMDB-73291: Unbound SARS-CoV-2 D614G spike
Method: EM (single particle) / Resolution: 3.52 Å

73292

9ypb

EMDB-73292, PDB-9ypb:
Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, subgroup II conformation
Method: EM (single particle) / Resolution: 3.5 Å

73306

9ypr

EMDB-73306, PDB-9ypr:
Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, subgroup II conformation
Method: EM (single particle) / Resolution: 3.46 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

Source
  • homo sapiens (human)
  • severe acute respiratory syndrome coronavirus 2
KeywordsVIRAL PROTEIN / SARS-CoV-2 / neutralizing antibody / neutraling antibody / neutralizing anbitody

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