[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 8,470 items for (author: xiao & y)

EMDB-67112:
LolCDE in complex with SMT-738_1
Method: single particle / : Dong CJ, Li HT

EMDB-67113:
LolCDE in complex with SMT-738_2
Method: single particle / : Dong CJ, Li HT

EMDB-62786:
Cryo-EM structure of SARS-CoV-2 BA.2.75 Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-62788:
Cryo-EM structure of SARS-CoV-2 PT Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-67440:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein complex with macrocyclic peptide 6L3 (All RBDs up)
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67548:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein complex with a macrocyclic peptide 6L3-3P11K (Two RBDs up)
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67549:
Cryo-EM map of SARS-CoV-2 PT Spike Protein,Three RBDs down
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67568:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein (Three RBDs down)
Method: single particle / : Wang M, Peng Q, Yang JY, Luo H, Shi Y

PDB-9l3i:
Cryo-EM structure of SARS-CoV-2 BA.2.75 Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

PDB-9l3q:
Cryo-EM structure of SARS-CoV-2 PT Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-63769:
the complex of D14 and RGSV P3
Method: single particle / : Huang YC

PDB-9mb8:
the complex of D14 and RGSV P3
Method: single particle / : Huang YC

EMDB-63503:
antibody 20G5 Fab in complex with human B7-H3 (IgC)
Method: single particle / : Bin L, Shuaixiang Z, kaijie H

EMDB-63505:
antibody 20G5 (Fab')2 in complex with human B7-H3
Method: single particle / : Li B, Zhou S, He K

PDB-9ly5:
antibody 20G5 Fab in complex with human B7-H3 (IgC)
Method: single particle / : Bin L, Shuaixiang Z, kaijie H

PDB-9ly6:
antibody 20G5 (Fab')2 in complex with human B7-H3
Method: single particle / : Li B, Zhou S, He K

EMDB-52852:
structure of two human ELF2 transcription factors in complex with a nucleosome
Method: single particle / : Xiao T, Crowe-McAuliffe C, Dienemann C, Taipale J

EMDB-70260:
Human MPC1-2 Complex
Method: single particle / : Qi X, Sun Y, Wang Y

EMDB-71604:
Consensus map for Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight-base-pair linker
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71606:
Focus map of DNMT3A2/3B3 tetramer2 for Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71607:
Focus map of nucleosome 1 for Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71608:
Focus map of nucleosome 2 for Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71609:
Focus map of nucleosome1_PWWP1 for Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-67802:
Structure of the flotillin complex in situ
Method: subtomogram averaging / : Lu M, Gao N

EMDB-64142:
Cryo-EM structure of the HBsAg dimer and Complex with Fab
Method: single particle / : Liu Y, Liao M, Liu Z, Ju B, Zhang Z

PDB-9ugo:
Cryo-EM structure of the HBsAg dimer and Complex with Fab
Method: single particle / : Liu Y, Liao M, Liu Z, Ju B, Zhang Z

EMDB-62027:
Cryo-EM structure of E coli pstSCAB in the catalytic intermediate state
Method: single particle / : Chen QF, Xiao H

EMDB-62031:
Cryo-EM structure of E coli pstSCAB in the pretranslocation state
Method: single particle / : Chen QF, Xiao H

EMDB-62032:
Cryo-EM structure of E coli pstSCAB in the resting state
Method: single particle / : Chen QF, Xiao H

PDB-9k3s:
Cryo-EM structure of E coli pstSCAB in the catalytic intermediate state
Method: single particle / : Chen QF, Xiao H

PDB-9k3x:
Cryo-EM structure of E coli pstSCAB in the pretranslocation state
Method: single particle / : Chen QF, Xiao H

PDB-9k3y:
Cryo-EM structure of E coli pstSCAB in the resting state
Method: single particle / : Chen QF, Xiao H

EMDB-66412:
mouse PDCD5-TRiC-ADP complex
Method: single particle / : Song QQ, Cong Y

EMDB-64929:
Cryo-EM structure of the multi-component acyltransferase complex MucABC from Streptococcus macacae at a stoichiometric ratio of 4:2:2
Method: single particle / : Luo Z, Shen Z, Liao G, Tang X, Pan X

EMDB-64933:
Cryo-EM structure of the multi-component acyltransferase complex MucABC from Streptococcus macacae at a stoichiometric ratio of 4:4:4
Method: single particle / : Luo Z, Shen Z, Liao G, Tang X, Pan X

PDB-9vbo:
Cryo-EM structure of the multi-component acyltransferase complex MucABC from Streptococcus macacae at a stoichiometric ratio of 4:2:2
Method: single particle / : Luo Z, Shen Z, Liao G, Tang X, Pan X

PDB-9vbt:
Cryo-EM structure of the multi-component acyltransferase complex MucABC from Streptococcus macacae at a stoichiometric ratio of 4:4:4
Method: single particle / : Luo Z, Shen Z, Liao G, Tang X, Pan X

EMDB-66358:
Cryo-EM structure of TMEM63A-digitonin-cholesterol
Method: single particle / : Lin Y, Zhou Z, Han Y, Cheng D, Wang H, Ju L, Zhang Y, Cox DC, Corry B

PDB-9wxv:
Cryo-EM structure of TMEM63A-digitonin-cholesterol
Method: single particle / : Lin Y, Zhou Z, Han Y, Cheng D, Wang H, Ju L, Zhang Y, Cox DC, Corry B

EMDB-51820:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

EMDB-51899:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

EMDB-52095:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

EMDB-52299:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

PDB-9h3g:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

PDB-9h6i:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

PDB-9hes:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

PDB-9hmw:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

EMDB-63785:
Cryo-EM structure of dopaminated Tau fibril
Method: helical / : Liu Z, Li X, Liu C

PDB-9mc2:
Cryo-EM structure of dopaminated Tau fibril
Method: helical / : Liu Z, Li X, Liu C

EMDB-72964:
Cryo-EM structure of IDH1 R132H
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more