[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 19,424 items for (author: xi & y)

EMDB-66181:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

PDB-9wqv:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

EMDB-63803:
Plant chloroplast dicarboxylate transporter AtDiT1
Method: single particle / : Yang Z, Zhang P

EMDB-63804:
Plant chloroplast dicarboxylate transporter AtDiT1 bound with OAA
Method: single particle / : Yang Z, Zhang P

EMDB-63805:
Plant chloroplast dicarboxylate transporter AtDiT1 bound with 2-OG
Method: single particle / : Yang Z, Zhang P

EMDB-63806:
Plant chloroplast dicarboxylate transporter AtDiT2.1
Method: single particle / : Yang Z, Zhang P

EMDB-63807:
Plant chloroplast dicarboxylate transporter AtDiT2.1 bound with malate
Method: single particle / : Yang Z, Zhang P

EMDB-63808:
Plant chloroplast dicarboxylate transporter AtDiT2.1 bound with Glu
Method: single particle / : Yang Z, Zhang P

PDB-9mcr:
Plant chloroplast dicarboxylate transporter AtDiT1
Method: single particle / : Yang Z, Zhang P

PDB-9mcs:
Plant chloroplast dicarboxylate transporter AtDiT1 bound with OAA
Method: single particle / : Yang Z, Zhang P

PDB-9mct:
Plant chloroplast dicarboxylate transporter AtDiT1 bound with 2-OG
Method: single particle / : Yang Z, Zhang P

PDB-9mcu:
Plant chloroplast dicarboxylate transporter AtDiT2.1
Method: single particle / : Yang Z, Zhang P

PDB-9mcv:
Plant chloroplast dicarboxylate transporter AtDiT2.1 bound with malate
Method: single particle / : Yang Z, Zhang P

PDB-9u32:
Plant chloroplast dicarboxylate transporter AtDiT2.1 bound with Glu
Method: single particle / : Yang Z, Zhang P

EMDB-65103:
Structure of a membrane-bound inositol phosphorylceramide synthase and ceramide complex
Method: single particle / : Chen JH, Ke Y, Zhang M, Yu HJ

EMDB-66750:
Structure of a membrane-bound inositol phosphorylceramide synthase and Aureobasidin A complex
Method: single particle / : Chen JH, Ke Y, Zhang M, Yu HJ

PDB-9vj4:
Structure of a membrane-bound inositol phosphorylceramide synthase and ceramide complex
Method: single particle / : Chen JH, Ke Y, Zhang M, Yu HJ

PDB-9xd0:
Structure of a membrane-bound inositol phosphorylceramide synthase and Aureobasidin A complex
Method: single particle / : Chen JH, Ke Y, Zhang M, Yu HJ

EMDB-67112:
LolCDE in complex with SMT-738_1
Method: single particle / : Dong CJ, Li HT

EMDB-67113:
LolCDE in complex with SMT-738_2
Method: single particle / : Dong CJ, Li HT

EMDB-62786:
Cryo-EM structure of SARS-CoV-2 BA.2.75 Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-62788:
Cryo-EM structure of SARS-CoV-2 PT Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-67440:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein complex with macrocyclic peptide 6L3 (All RBDs up)
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67548:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein complex with a macrocyclic peptide 6L3-3P11K (Two RBDs up)
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67549:
Cryo-EM map of SARS-CoV-2 PT Spike Protein,Three RBDs down
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67568:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein (Three RBDs down)
Method: single particle / : Wang M, Peng Q, Yang JY, Luo H, Shi Y

PDB-9l3i:
Cryo-EM structure of SARS-CoV-2 BA.2.75 Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

PDB-9l3q:
Cryo-EM structure of SARS-CoV-2 PT Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-65356:
channel D complex with 4
Method: single particle / : Jiang DH, Ma B

EMDB-65357:
channel A complex with 1
Method: single particle / : Jiang DH, Ma B

EMDB-65358:
channel C complex with 3
Method: single particle / : Jiang DH, Ma B

EMDB-65359:
channel B complex with 2
Method: single particle / : Jiang DH, Ma B

PDB-9vu9:
channel D complex with 4
Method: single particle / : Jiang DH, Ma B

PDB-9vua:
channel A complex with 1
Method: single particle / : Jiang DH, Ma B

PDB-9vub:
channel C complex with 3
Method: single particle / : Jiang DH, Ma B

PDB-9vuc:
channel B complex with 2
Method: single particle / : Jiang DH, Ma B

EMDB-70800:
D3 prohead 1 - icosahedral reconstruction
Method: single particle / : Belford AK, Huet A, Maurer JB, Duda RL, Conway JF

EMDB-70831:
Penton focused prohead 1
Method: single particle / : Belford AK, Huet A, Maurer JB, Duda RL, Conway JF

EMDB-70832:
D3 prohead 1
Method: single particle / : Belford AK, Huet A, Maurer JB, Duda RL, Conway JF

EMDB-70834:
Penton focused D3 prohead 2
Method: single particle / : Belford AK, Huet A, Maurer JB, Duda RL, Conway JF

EMDB-70878:
D3 Virion icos
Method: single particle / : Belford AK, Huet A, Maurer JB, Duda RL, Conway JF

EMDB-70879:
Penton focused D3 virion capsid
Method: single particle / : Belford AK, Huet A, Maurer JB, Duda RL, Conway JF

EMDB-70884:
Icosahedral D3 expanded capsid
Method: single particle / : Belford AK, Huet A, Maurer JB, Duda RL, Conway JF

EMDB-70887:
Penton focused expanded D3 capsid
Method: single particle / : Belford AK, Huet A, Maurer JB, Duda RL, Conway JF

PDB-9osb:
D3 prohead 1
Method: single particle / : Belford AK, Huet A, Maurer JB, Duda RL, Conway JF

PDB-9oth:
D3 prohead 1
Method: single particle / : Belford AK, Huet A, Maurer JB, Duda RL, Conway JF

PDB-9ous:
D3 Virion icos
Method: single particle / : Belford AK, Huet A, Maurer JB, Duda RL, Conway JF

PDB-9ouz:
Icosahedral D3 expanded capsid
Method: single particle / : Belford AK, Huet A, Maurer JB, Duda RL, Conway JF

EMDB-70486:
CryoEM structure of Toxin B (TcdB) from clostridioides difficile complexed with taurochenodeoxycholic acid (TCDCA)
Method: single particle / : Miletic S, Li Z, Melnyk RA

EMDB-70487:
CryoEM structure of Toxin B (TcdB) from clostridioides difficile complexed with methyl cholate
Method: single particle / : Miletic S, Li Z, Melnyk RA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more