[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 42 items for (author: williams & dt)

EMDB-43658:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43659:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43660:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vye:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyf:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyg:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-13857:
Beta049 fab in complex with SARS-CoV2 beta-Spike glycoprotein, The Beta mAb response underscores the antigenic distance to other SARS-CoV-2 variants
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13868:
Beta-50 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13869:
COVOX-222 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13870:
Beta-43 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13871:
Beta-26 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13872:
Beta-32 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13873:
Beta-53 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13874:
Beta-44 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13875:
Beta-06 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13097:
human DEPTOR in a complex with mutant human mTORC1 A1459P
Method: single particle / : Heimhalt M, Berndt A

PDB-7owg:
human DEPTOR in a complex with mutant human mTORC1 A1459P
Method: single particle / : Heimhalt M, Berndt A, Wagstaff J, Anandapadamanaban M, Perisic O, Maslen S, McLaughlin S, Yu WH, Masson GR, Boland A, Ni X, Yamashita K, Murshudov GN, Skehel M, Freund SM, Williams RL

EMDB-12237:
Subtomogram average reconstruction of humanVPS34 complex II bound to Rab5a on a lipid membrane
Method: subtomogram averaging / : Tremel S, Ohashi Y, Morado DR, Bertram J, Perisic O, Brandt LTL, von Wrisberg MK, Chen ZA, Maslen SL, Kovtun O, Skehel M, Rappsilber J, Lang K, Munro S, Briggs JAG, Williams RL

EMDB-12238:
Sample bin4 tomogram for the VPS34 complex II on Rab5a coupled lipid vesicles
Method: electron tomography / : Tremel S, Ohashi Y, Morado DR, Bertram J, Perisic O, Brandt LTL, von Wrisberg MK, Chen ZA, Maslen SL, Kovtun O, Skehel M, Rappsilber J, Lang K, Munro S, Briggs JAG, Williams RL

EMDB-12214:
human complex II-BATS bound to membrane-attached Rab5a-GTP
Method: subtomogram averaging / : Tremel S, Morado DR

PDB-7bl1:
human complex II-BATS bound to membrane-attached Rab5a-GTP
Method: subtomogram averaging / : Tremel S, Morado DR, Kovtun O, Williams RL, Briggs JAG, Munro S, Ohashi Y, Bertram J, Perisic O

EMDB-22829:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

PDB-7kdt:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

EMDB-21965:
Negative stain EM map of SARS CoV-2 spike protein (trimer)
Method: single particle / : Binshtein E

EMDB-21974:
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2165
Method: single particle / : Binshtein E

EMDB-21975:
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2196
Method: single particle / : Binshtein E

EMDB-21976:
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2130
Method: single particle / : Binshtein E

EMDB-21977:
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2130 and Fab COV2-2196
Method: single particle / : Binshtein E

EMDB-10132:
cryo-EM structure of mTORC1 bound to PRAS40-fused active RagA/C GTPases
Method: single particle / : Anandapadamanaban M, Berndt A

EMDB-10133:
cryo-EM structure of mTORC1 bound to active RagA/C GTPases
Method: single particle / : Anandapadamanaban M, Berndt A

PDB-6sb0:
cryo-EM structure of mTORC1 bound to PRAS40-fused active RagA/C GTPases
Method: single particle / : Anandapadamanaban M, Berndt A, Masson GR, Perisic O, Williams RL

PDB-6sb2:
cryo-EM structure of mTORC1 bound to active RagA/C GTPases
Method: single particle / : Anandapadamanaban M, Berndt A, Masson GR, Perisic O, Williams RL

EMDB-7321:
Integrative Structure and Functional Anatomy of a Nuclear Pore Complex
Method: subtomogram averaging / : Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP

PDB-5fvm:
Cryo electron microscopy of a complex of Tor and Lst8
Method: single particle / : Baretic D, Berndt A, Ohashi Y, Johnson CM, Williams RL

EMDB-3329:
Cryo electron microscopy of a complex of Tor and Lst8
Method: single particle / : Baretic D, Berndt A, Ohashi Y, Johnson CM, Williams RL

EMDB-3334:
Cryo electron microscopy of a complex of Tor-323RFP and Lst8
Method: single particle / : Baretic D, Berndt A, Ohashi Y, Johnson CM, Williams RL

EMDB-3335:
Cryo electron microscopy of a complex of Tor-1190RFP and Lst8
Method: single particle / : Baretic D, Berndt A, Ohashi Y, Johnson CM, Williams RL

EMDB-3336:
Cryo electron microscopy of a complex of Tor-1175RFP and Lst8
Method: single particle / : Baretic D, Berndt A, Ohashi Y, Johnson CM, Williams RL

EMDB-5856:
Negative stain reconstruction of HIV envelope glycoprotein BG505 SOSIP.664 in complex with CAP256-VRC26.09 Fab
Method: single particle / : Ward AB, Kim HJ

EMDB-5037:
3D EM map of E.coli NhaA
Method: electron crystallography / : Williams K, Kuehlbrandt W

EMDB-1182:
Structural and functional insights into the interaction of echoviruses and decay-accelerating factor.
Method: single particle / : Pettigrew DM, Williams DT, Kerrigan D, Evans DJ, Lea SM, Bhella D

EMDB-1183:
Structural and functional insights into the interaction of echoviruses and decay-accelerating factor.
Method: single particle / : Pettigrew DM, Williams DT, Kerrigan D, Evans DJ, Lea SM, Bhella D

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more