[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 242 items for (author: white & ad)

EMDB-51930:
BAM-hinge (LVPR)
Method: single particle / : Machin JM, Ranson NA

EMDB-51931:
BAM-hinge (GSGS)
Method: single particle / : Machin JM, Ranson NA

EMDB-51933:
BAM-hinge (LVPR) suppressor (T434A)
Method: single particle / : Machin JM, Ranson NA

PDB-9h84:
BAM-hinge (LVPR)
Method: single particle / : Machin JM, Ranson NA

PDB-9h85:
BAM-hinge (GSGS)
Method: single particle / : Machin JM, Ranson NA

PDB-9h89:
BAM-hinge (LVPR) suppressor (T434A)
Method: single particle / : Machin JM, Ranson NA

EMDB-72086:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9q03:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-47972:
VIP3Cb1 Toxin structure
Method: single particle / : Rau MJ, Rydel T, Zheng M, White T

EMDB-47974:
VIP3Cb1 Protoxin Structure
Method: single particle / : Rau MJ, Rydel T, Zheng M, White T

PDB-9efg:
VIP3Cb1 Toxin structure
Method: single particle / : Rau MJ, Rydel T, Zheng M, White T

PDB-9efi:
VIP3Cb1 Protoxin Structure
Method: single particle / : Rau MJ, Rydel T, Zheng M, White T

EMDB-46908:
Recombinant AD-fold Paired Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46915:
Recombinant AD-fold Quadruple Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-40564:
CUS-3 Mature Virus Capsid
Method: single particle / : Whitehead III RD, Alexandrescu AT, White S, Teschke CM

PDB-8skg:
CUS-3 Mature Virus Capsid
Method: single particle / : Whitehead III RD, Alexandrescu AT, White S, Teschke CM

EMDB-46870:
Recombinant AD PHF
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46885:
AD-fold Tri Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Kunach P, Diamond MI

EMDB-46909:
Recombinant AD-fold Paired Helical Filament II Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46911:
Recombinant AD-fold Triple Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-47092:
Recombinant Truncated Tau 266-391 fibrillized in NaCl Second Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-43250:
SARS-CoV-2 spike omicron (BA.1) ectodomain trimer in complex with SC27 Fab, global refinement
Method: single particle / : Byrne PO, McLellan JS

EMDB-43261:
SARS-CoV-2 spike omicron (BA.1) ectodomain dimer-of-trimers in complex with SC27 Fab, global refinement
Method: single particle / : Byrne PO, McLellan JS

EMDB-46937:
Recombinant Truncated Tau 266-391 fibrillized in NaCl
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-43795:
CryoEM structure of AMETA-A3
Method: single particle / : Huang W, Sang Z, Taylor D

PDB-9arv:
CryoEM structure of AMETA-A3
Method: single particle / : Huang W, Sang Z, Taylor D

EMDB-19525:
Nipah virus (NiV) fusion protein in complex with neutralizing Fab92
Method: single particle / : Avanzato VA, Stass R, Duyvesteyn HME, Bowden TA

PDB-8rvn:
Nipah virus (NiV) fusion protein in complex with neutralizing Fab92
Method: single particle / : Avanzato VA, Stass R, Duyvesteyn HME, Bowden TA

EMDB-43260:
SARS-CoV-2 spike omicron (BA.1) ectodomain trimer in complex with SC27 Fab, local refinement
Method: single particle / : Byrne PO, McLellan JS

EMDB-43315:
SARS-CoV-2 spike omicron (BA.1) RBD ectodomain dimer-of-trimers in complex with SC27 Fabs
Method: single particle / : Byrne PO, McLellan JS

PDB-8vif:
SARS-CoV-2 spike omicron (BA.1) ectodomain trimer in complex with SC27 Fab, local refinement
Method: single particle / : Byrne PO, McLellan JS

PDB-8vke:
SARS-CoV-2 spike omicron (BA.1) RBD ectodomain dimer-of-trimers in complex with SC27 Fabs
Method: single particle / : Byrne PO, McLellan JS

EMDB-40271:
Mycobacterium phage Adjutor
Method: single particle / : Podgorski JM, White SJ

PDB-8saj:
Mycobacterium phage Adjutor
Method: single particle / : Podgorski JM, White SJ

EMDB-28198:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with LLNL-199
Method: single particle / : Binshtein E, Crowe JE

EMDB-28199:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Method: single particle / : Binshtein E, Crowe JE

PDB-8ekd:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Method: single particle / : Binshtein E, Crowe JE

EMDB-27271:
CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH

EMDB-27272:
CryoEM structure of Western equine encephalitis virus VLP
Method: single particle / : Zimmerman MI, Fremont DH

EMDB-40711:
CryoEM structure of Western equine encephalitis virus VLP in complex with the chimeric Du-D1-Mo-D2 MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID)

PDB-8dan:
CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

PDB-8daq:
CryoEM structure of Western equine encephalitis virus VLP
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

PDB-8sqn:
CryoEM structure of Western equine encephalitis virus VLP in complex with the chimeric Du-D1-Mo-D2 MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-17613:
10-mer ring of human metapneumovirus (HMPV) N-RNA
Method: single particle / : Whitehead JD, Decool H, Leyrat C, Carrique L, Fix J, Eleouet JF, Galloux M, Renner M

EMDB-17614:
11-mer ring of human metapneumovirus (HMPV) N-RNA
Method: single particle / : Whitehead JD, Decool H, Leyrat C, Carrique L, Fix J, Eleouet JF, Galloux M, Renner M

EMDB-17615:
Spiral of assembled human metapneumovirus (HMPV) N-RNA
Method: single particle / : Whitehead JD, Decool H, Leyrat C, Carrique L, Fix J, Eleouet JF, Galloux M, Renner M

EMDB-17616:
Local refinement of dimeric human metapneumovirus (HMPV) N-RNA
Method: single particle / : Whitehead JD, Decool H, Leyrat C, Carrique L, Fix J, Eleouet JF, Galloux M, Renner M

EMDB-17617:
10-mer ring of HMPV N-RNA bound to the C-terminal region of P
Method: single particle / : Whitehead JD, Decool H, Leyrat C, Carrique L, Fix J, Eleouet JF, Galloux M, Renner M

EMDB-17618:
11-mer ring of HMPV N-RNA bound to the C-terminal region of P
Method: single particle / : Whitehead JD, Decool H, Leyrat C, Carrique L, Fix J, Eleouet JF, Galloux M, Renner M

EMDB-17619:
Rigid body fit of assembled HMPV N-RNA spiral bound to the C-terminal region of P
Method: single particle / : Whitehead JD, Decool H, Leyrat C, Carrique L, Fix J, Eleouet JF, Galloux M, Renner M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more