[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,214 items for (author: wen & k)

PDB-8ghl:
the Hir complex core
Method: single particle / : Kim HJ, Murakami K

PDB-8ghn:
Composite model of the yeast Hir Complex with Asf1/H3/H4
Method: single particle / : Kim HJ, Murakami K

EMDB-38617:
SARS-CoV-2 RBD + IMCAS-123 + IMCAS-72 Fab
Method: single particle / : Tong Z, Cui Y, Xie Y, Tong J, Gao GF, Qi J

EMDB-38618:
SARS-CoV-2 RBD + IMCAS-364 + hACE2
Method: single particle / : Tong Z, Cui Y, Xie Y, Tong J, Gao GF, Qi J

EMDB-38619:
SARS-CoV-2 RBD + IMCAS-364 (Local Refinement)
Method: single particle / : Tong Z, Cui Y, Xie Y, Tong J, Gao GF, Qi J

EMDB-38620:
SARS-CoV-2 Omicron BA.4 RBD + IMCAS-316 + ACE2
Method: single particle / : Tong Z, Cui Y, Xie Y, Tong J, Gao GF, Qi J

EMDB-38621:
SARS-CoV-2 spike + IMCAS-123
Method: single particle / : Tong Z, Cui Y, Xie Y, Tong J, Gao GF, Qi J

EMDB-38823:
Cryo-EM structure of the 123-316 scDb/PT-RBD complex
Method: single particle / : Jia GW, Tong Z, Tong JY, Su ZM

PDB-8xse:
SARS-CoV-2 RBD + IMCAS-123 + IMCAS-72 Fab
Method: single particle / : Tong Z, Cui Y, Xie Y, Tong J, Gao GF, Qi J

PDB-8xsf:
SARS-CoV-2 RBD + IMCAS-364 + hACE2
Method: single particle / : Tong Z, Cui Y, Xie Y, Tong J, Gao GF, Qi J

PDB-8xsi:
SARS-CoV-2 RBD + IMCAS-364 (Local Refinement)
Method: single particle / : Tong Z, Cui Y, Xie Y, Tong J, Gao GF, Qi J

PDB-8xsj:
SARS-CoV-2 Omicron BA.4 RBD + IMCAS-316 + ACE2
Method: single particle / : Tong Z, Cui Y, Xie Y, Tong J, Gao GF, Qi J

PDB-8xsl:
SARS-CoV-2 spike + IMCAS-123
Method: single particle / : Tong Z, Cui Y, Xie Y, Tong J, Gao GF, Qi J

PDB-8y0y:
Cryo-EM structure of the 123-316 scDb/PT-RBD complex
Method: single particle / : Jia GW, Tong Z, Tong JY, Su ZM

EMDB-40006:
Hir complex core
Method: single particle / : Kim HJ, Murakami K

EMDB-40029:
Hir3 Arm/Tail, Hir2 WD40, Hpc2 C-term
Method: single particle / : Kim HJ, Murakami K

EMDB-40030:
Hir1 WD40 domains and Asf1/H3/H4
Method: single particle / : Kim HJ, Murakami K

EMDB-40037:
Composite map of the Hir complex with Asf1/H3/H4
Method: single particle / : Kim HJ, Murakami K

EMDB-40078:
Chaetomium thermophilum Hir3
Method: single particle / : Szurgot MR, van Eeuwen T, Kim HJ, Marmorstein R

PDB-8gha:
Hir3 Arm/Tail, Hir2 WD40, C-terminal Hpc2
Method: single particle / : Kim HJ, Murakami K

PDB-8ghm:
Hir1 WD40 domains and Asf1/H3/H4
Method: single particle / : Kim HJ, Murakami K

PDB-8gix:
Chaetomium thermophilum Hir3
Method: single particle / : Szurgot MR, van Eeuwen T, Kim HJ, Marmorstein R

EMDB-43296:
Constituent EM map: Focused refinement S100A1 of mouse RyR1 in complex with S100A1 (EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-17295:
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '3 up' RBD conformation
Method: single particle / : Weckener M, Naismith JH, Owens RJ

PDB-8oyt:
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '3 up' RBD conformation
Method: single particle / : Weckener M, Naismith JH, Owens RJ

EMDB-50229:
Cryo-tomogram of FIB-milled vegetatively growing yeast cell with mitochondria
Method: electron tomography / : Wettstein R, Hugener J, Gillet L, Hernandez-Armenta Y, Henggeler A, Xu J, Van Gerwen J, Wollweber F, Arter M, Aebersold R, Beltrao P, Pilhofer M, Matos J

EMDB-50230:
Cryo-tomogram of FIB-milled pre-meiotic yeast cell with mitochondria
Method: electron tomography / : Wettstein R, Hugener J, Gillet L, Hernandez-Armenta Y, Henggeler A, Xu J, Van Gerwen J, Wollweber F, Arter M, Aebersold R, Beltrao P, Pilhofer M, Matos J

EMDB-50231:
Cryo-tomogram of FIB-milled meiotic yeast cell containing mitochondria with filaments
Method: electron tomography / : Wettstein R, Hugener J, Gillet L, Hernandez-Armenta Y, Henggeler A, Xu J, Van Gerwen J, Wollweber F, Arter M, Aebersold R, Beltrao P, Pilhofer M, Matos J

EMDB-50232:
Cryo-tomogram of FIB-milled yeast spore with mitochondria
Method: electron tomography / : Wettstein R, Hugener J, Gillet L, Hernandez-Armenta Y, Henggeler A, Xu J, Van Gerwen J, Wollweber F, Arter M, Aebersold R, Beltrao P, Pilhofer M, Matos J

EMDB-50233:
Cryo-tomogram of FIB-milled meiotic yeast cell containing mitochondria with filament arrays
Method: electron tomography / : Wettstein R, Hugener J, Gillet L, Hernandez-Armenta Y, Henggeler A, Xu J, Van Gerwen J, Wollweber F, Arter M, Aebersold R, Beltrao P, Pilhofer M, Matos J

EMDB-50234:
Cryo-tomogram of purified meiotic yeast mitochondria with Ald4 filaments
Method: electron tomography / : Wettstein R, Hugener J, Gillet L, Hernandez-Armenta Y, Henggeler A, Xu J, Van Gerwen J, Wollweber F, Arter M, Aebersold R, Beltrao P, Pilhofer M, Matos J

EMDB-44839:
Intact V-ATPase State 2 and synaptophysin complex in mouse brain isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44840:
Intact V-ATPase State 3 and synaptophysin complex in mouse brain isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44841:
Intact V-ATPase State 3 in synaptophysin knock-out isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44842:
Intact V-ATPase State 2 in synaptophysin knock-out isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44843:
Intact V-ATPase State 1 and synaptophysin complex in mouse brain isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44844:
Intact V-ATPase State 1 in synaptophysin knock-out isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44845:
V0-only V-ATPase in synaptophysin gene knock-out mouse brain isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44846:
V0-only V-ATPase and synaptophysin complex in mouse brain isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44847:
Tomograms of isolated synaptic vesicles from Syp-/- mouse brain
Method: electron tomography / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44848:
Tomograms of isolated synaptic vesicles from wild-type mouse brain
Method: electron tomography / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44855:
Intact state1 V-ATPase of isolated synaptic vesicles from wild-type mouse brain by subtomogram averaging
Method: subtomogram averaging / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44856:
Intact state2 V-ATPase of isolated synaptic vesicles from wild-type mouse brain by subtomogram averaging
Method: subtomogram averaging / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44857:
Intact state3 V-ATPase of isolated synaptic vesicles from wild-type mouse brain by subtomogram averaging
Method: subtomogram averaging / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

EMDB-44858:
V0-only V-ATPase of isolated synaptic vesicles from wild-type mouse brain by subtomogram averaging
Method: subtomogram averaging / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

PDB-9bra:
Intact V-ATPase State 2 and synaptophysin complex in mouse brain isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

PDB-9brq:
Intact V-ATPase State 3 and synaptophysin complex in mouse brain isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

PDB-9brr:
Intact V-ATPase State 3 in synaptophysin knock-out isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

PDB-9brs:
Intact V-ATPase State 2 in synaptophysin knock-out isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

PDB-9brt:
Intact V-ATPase State 1 and synaptophysin complex in mouse brain isolated synaptic vesicles
Method: single particle / : Wang C, Jiang W, Yang K, Wang X, Guo Q, Brunger AT

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more