[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 73 items for (author: weir & j)

EMDB-64384:
Structure of C. elegans piezo channel isoform k
Method: single particle / : Liu Y, Guo YR

EMDB-64385:
Structure of C. elegans piezo channel
Method: single particle / : Liu Y, Guo YR

PDB-9uox:
Structure of C. elegans piezo channel isoform k
Method: single particle / : Liu Y, Guo YR

PDB-9uoy:
Structure of C. elegans piezo channel
Method: single particle / : Liu Y, Guo YR

EMDB-45224:
Cryo EM structure of DCAF2
Method: single particle / : McMahon EJ, Wang W

EMDB-45225:
Cryo EM structure of DCAF2:Compound 1 complex
Method: single particle / : McMahon EJ, Wang W

EMDB-45226:
Cryo EM structure of a DCAF2:degrader:BRD4 ternary complex
Method: single particle / : McMahon EJ, Wang W

PDB-9c5t:
Cryo EM structure of DCAF2
Method: single particle / : McMahon EJ, Wang W

PDB-9c5u:
Cryo EM structure of DCAF2:Compound 1 complex
Method: single particle / : McMahon EJ, Wang W

PDB-9c5v:
Cryo EM structure of a DCAF2:degrader:BRD4 ternary complex
Method: single particle / : McMahon EJ, Wang W

EMDB-43017:
60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

EMDB-43018:
60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - PTC Local map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

EMDB-43019:
60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Local map L1 region)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

EMDB-43020:
60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Local map Rrp14/Rrp15/Ssf1 region)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

EMDB-43021:
60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

EMDB-43022:
60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Dbp10 Local map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

EMDB-43023:
60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Low-pass filtered locally refined map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

EMDB-43024:
60S ribosome biogenesis intermediate (Dbp10 catalytic structure - L1 local map
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

EMDB-43026:
60S ribosome biogenesis intermediate (Dbp10 catalytic intermediate - Rrp14/Rrp15/Ssf1 local map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

EMDB-43027:
60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

EMDB-43028:
60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Dbp10 Local map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

EMDB-43029:
60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - H64 Local map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

PDB-8v83:
60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

PDB-8v84:
60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

PDB-8v85:
60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Low-pass filtered locally refined map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

PDB-8v87:
60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
Method: single particle / : Cruz VE, Weirich CS, Peddada N, Erzberger JP

EMDB-40094:
17b10 fab in complex with full-length SARS-CoV-2 Spike G614 trimer
Method: single particle / : Kwon HJ, Zhang J, Kosikova M, Tang WC, Rodriguez UO, Peng HQ, Meseda CA, Pedro CL, Schmeisser F, Lu JM, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Pasetti MF, Weir JP, Chen B, Xie H

EMDB-40095:
17B10 fab in complex with up-RBD of SARS-CoV-2 Spike G614 trimer
Method: single particle / : Kwon HJ, Zhang J, Kosikova M, Tang WC, Rodriguez UO, Peng HQ, Meseda CA, Pedro CL, Schmeisser F, Lu JM, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Pasetti MF, Weir JP, Chen B, Xie H

PDB-8gjm:
17b10 fab in complex with full-length SARS-CoV-2 Spike G614 trimer
Method: single particle / : Kwon HJ, Zhang J, Kosikova M, Tang WC, Rodriguez UO, Peng HQ, Meseda CA, Pedro CL, Schmeisser F, Lu JM, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Pasetti MF, Weir JP, Chen B, Xie H

PDB-8gjn:
17B10 fab in complex with up-RBD of SARS-CoV-2 Spike G614 trimer
Method: single particle / : Kwon HJ, Zhang J, Kosikova M, Tang WC, Rodriguez UO, Peng HQ, Meseda CA, Pedro CL, Schmeisser F, Lu JM, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Pasetti MF, Weir JP, Chen B, Xie H

EMDB-26651:
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
Method: single particle / : Sekulski K, Cruz VE, Weirich CS, Erzberger JP

EMDB-26686:
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
Method: single particle / : Sekulski K, Cruz VE, Weirich CS, Erzberger JP

EMDB-26689:
Locally refined 5S rRNP map from the nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
Method: single particle / : Sekulski K, Cruz VE, Weirich CS, Erzberger JP

EMDB-26703:
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Method: single particle / : Sekulski K, Cruz VE, Weirich CS, Erzberger JP

EMDB-26799:
Nucleoplasmic pre-60S intermediate of the Nog2 containing post-rotation state from a SPB1 D52A strain
Method: single particle / : Sekulski K, Cruz VE, Weirich CS, Erzberger JP

EMDB-26941:
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
Method: single particle / : Sekulski K, Cruz VE, Weirich CS, Erzberger JP

PDB-7uoo:
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
Method: single particle / : Sekulski K, Cruz VE, Weirich CS, Erzberger JP

PDB-7uqb:
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
Method: single particle / : Sekulski K, Cruz VE, Weirich CS, Erzberger JP

PDB-7uqz:
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Method: single particle / : Sekulski K, Cruz VE, Weirich CS, Erzberger JP

PDB-7uui:
Nucleoplasmic pre-60S intermediate of the Nog2 containing post-rotation state from a SPB1 D52A strain
Method: single particle / : Sekulski K, Cruz VE, Weirich CS, Erzberger JP

PDB-7v08:
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
Method: single particle / : Sekulski K, Cruz VE, Weirich CS, Erzberger JP

EMDB-34431:
Cryo-EM structure of BAP1-ASXL1 bound to chromatosome
Method: single particle / : Ge W, Yu C, Xu RM

EMDB-34432:
Cryo-EM structure of BAP1-ASXL1 bound to nucleosome
Method: single particle / : Ge W, Yu C, Xu RM

EMDB-35179:
Constituent map of cryo-EM structure of BAP1-ASXL1 bound to chromatosome
Method: single particle / : Ge W, Yu C, Xu RM

EMDB-35180:
Constituent map of cryo-EM structure of BAP1-ASXL1 bound to chromatosome
Method: single particle / : Ge W, Yu C, Xu RM

EMDB-35181:
Constituent map of cryo-EM structure of BAP1-ASXL1 bound to chromatosome
Method: single particle / : Ge W, Yu C, Xu RM

EMDB-35182:
Consensus map of cryo-EM structure of BAP1-ASXL1 bound to chromatosome
Method: single particle / : Ge W, Yu C, Xu RM

PDB-8h1t:
Cryo-EM structure of BAP1-ASXL1 bound to chromatosome
Method: single particle / : Ge W, Yu C, Xu RM

EMDB-26259:
State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall map
Method: single particle / : Cruz VE, Sekulski K, Peddada N, Erzberger JP

PDB-7u0h:
State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model
Method: single particle / : Cruz VE, Sekulski K, Peddada N, Erzberger JP

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more