[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 82 items for (author: weber & j)

EMDB-50229:
Cryo-tomogram of FIB-milled vegetatively growing yeast cell with mitochondria
Method: electron tomography / : Wettstein R, Hugener J, Gillet L, Hernandez-Armenta Y, Henggeler A, Xu J, Van Gerwen J, Wollweber F, Arter M, Aebersold R, Beltrao P, Pilhofer M, Matos J

EMDB-50230:
Cryo-tomogram of FIB-milled pre-meiotic yeast cell with mitochondria
Method: electron tomography / : Wettstein R, Hugener J, Gillet L, Hernandez-Armenta Y, Henggeler A, Xu J, Van Gerwen J, Wollweber F, Arter M, Aebersold R, Beltrao P, Pilhofer M, Matos J

EMDB-50231:
Cryo-tomogram of FIB-milled meiotic yeast cell containing mitochondria with filaments
Method: electron tomography / : Wettstein R, Hugener J, Gillet L, Hernandez-Armenta Y, Henggeler A, Xu J, Van Gerwen J, Wollweber F, Arter M, Aebersold R, Beltrao P, Pilhofer M, Matos J

EMDB-50232:
Cryo-tomogram of FIB-milled yeast spore with mitochondria
Method: electron tomography / : Wettstein R, Hugener J, Gillet L, Hernandez-Armenta Y, Henggeler A, Xu J, Van Gerwen J, Wollweber F, Arter M, Aebersold R, Beltrao P, Pilhofer M, Matos J

EMDB-50233:
Cryo-tomogram of FIB-milled meiotic yeast cell containing mitochondria with filament arrays
Method: electron tomography / : Wettstein R, Hugener J, Gillet L, Hernandez-Armenta Y, Henggeler A, Xu J, Van Gerwen J, Wollweber F, Arter M, Aebersold R, Beltrao P, Pilhofer M, Matos J

EMDB-50234:
Cryo-tomogram of purified meiotic yeast mitochondria with Ald4 filaments
Method: electron tomography / : Wettstein R, Hugener J, Gillet L, Hernandez-Armenta Y, Henggeler A, Xu J, Van Gerwen J, Wollweber F, Arter M, Aebersold R, Beltrao P, Pilhofer M, Matos J

EMDB-19548:
cryoEM structure of Acs1 filament determined by FilamentID
Method: helical / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19549:
cryoEM structure of the central Ald4 filament determined by FilamentID
Method: single particle / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19550:
cryoEM structure of purified Acs1 filament from meiotic yeast cells
Method: single particle / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19551:
cryo sub-tomogram average of Acs1 filament from spread meiotic yeast spheroplasts
Method: subtomogram averaging / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19552:
cryo sub-tomogram average of Ald4 filaments from purified meiotic yeast mitochondria
Method: subtomogram averaging / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19553:
cryo-tomogram of FIB-milled meiotic yeast cell containing filaments in mitochondria
Method: electron tomography / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19554:
cryo-tomogram of FIB-milled meiotic yeast cell containing filaments in the nucleus
Method: electron tomography / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19555:
cryo-tomogram of FIB-milled meiotic yeast cell containing filaments in the cytoplasm
Method: electron tomography / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19556:
cryo-tomogram of purified meiotic yeast mitochondrion containing Ald4 filaments
Method: electron tomography / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19557:
cryo-tomogram of spread meiotic yeast spheroplast containing Acs1 filaments
Method: electron tomography / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19558:
cryo-tomogram of spread starved yeast spheroplast containing filaments
Method: electron tomography / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

PDB-8rwj:
cryoEM structure of Acs1 filament determined by FilamentID
Method: helical / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

PDB-8rwk:
cryoEM structure of the central Ald4 filament determined by FilamentID
Method: single particle / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-40815:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies C3V5, V1V3, N611 and base from participant 017
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-40816:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies gp41-N611/FP and base from participant 03
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-40817:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies gp41-N611/FP and base from participant 07
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-40818:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies gp120-GH and base from participant 09
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-40819:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies C3V5, V1V3, gp41-GH/FP and base from participant 11
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-19562:
Vimentin intermediate filament protofibril stoichiometry
Method: subtomogram averaging / : Eibauer M, Medalia O

EMDB-19563:
Vimentin intermediate filament structure (delta tail)
Method: helical / : Eibauer M, Medalia O

PDB-8rve:
Vimentin intermediate filament
Method: helical / : Eibauer M, Medalia O

EMDB-16844:
Vimentin intermediate filament structure
Method: helical / : Eibauer M, Medalia O

EMDB-16024:
SARS-CoV-2 S protein in complex with pT1644 Fab
Method: single particle / : Stroeh L, Hansen G, Vollmer B, Krey T, Benecke T, Gruenewald K

EMDB-16026:
SARS-CoV-2 S protein in complex with pT1696 Fab
Method: single particle / : Hansen G, Benecke T, Vollmer B, Gruenewald K, Krey T

EMDB-28205:
Clostridioides difficile binary toxin translocase CDTb wild-type after calcium depletion from receptor binding domain 1 (RBD1) - Class 2
Method: single particle / : Abeyawardhane DL, Pozharski E

EMDB-28206:
Clostridioides difficile binary toxin translocase CDTb wild-type after calcium depletion from receptor binding domain 1 (RBD1) - Class 1
Method: single particle / : Abeyawardhane DL, Pozharski E

EMDB-28207:
Clostridioides difficile binary toxin translocase CDTb double mutant - D623A D734A
Method: single particle / : Abeyawardhane DL, Pozharski E

EMDB-26157:
Cryo-EM structure of BG505 SOSIP HIV-1 Env trimer in complex with CD4 receptor (D1D2) and broadly neutralizing darpin bnD.9
Method: single particle / : Cerutti G, Gorman J

PDB-7txd:
Cryo-EM structure of BG505 SOSIP HIV-1 Env trimer in complex with CD4 receptor (D1D2) and broadly neutralizing darpin bnD.9
Method: single particle / : Cerutti G, Gorman J, Kwong PD, Shapiro L

EMDB-15987:
In situ sub-tomogram average of the Ca. L. ossiferum ribosome
Method: subtomogram averaging / : Rodrigues-Oliveira T, Wollweber F, Ponce-Toledo R, Xu J, Rittmann S, Klingl A, Pilhofer M, Schleper C

EMDB-15988:
In situ sub-tomogram average of Ca. L. ossiferum actin filament
Method: subtomogram averaging / : Rodrigues-Oliveira T, Wollweber F, Ponce-Toledo R, Xu J, Rittmann S, Klingl A, Pilhofer M, Schleper C

EMDB-15989:
cryo-tomogram of a Ca. L. ossiferum cell
Method: electron tomography / : Rodrigues-Oliveira T, Wollweber F, Ponce-Toledo R, Xu J, Rittmann S, Klingl A, Pilhofer M, Schleper C

EMDB-15990:
cryo-tomogram of Ca. L. ossiferum protrusions
Method: electron tomography / : Rodrigues-Oliveira T, Wollweber F, Ponce-Toledo R, Xu J, Rittmann S, Klingl A, Pilhofer M, Schleper C

EMDB-15991:
cryo-tomogram of a Ca.L. ossiferum cell
Method: electron tomography / : Rodrigues-Oliveira T, Wollweber F, Ponce-Toledo R, Xu J, Rittmann S, Klingl A, Pilhofer M, Schleper C

EMDB-15992:
cryo-tomogram of a Ca. L. ossiferum cell
Method: electron tomography / : Rodrigues-Oliveira T, Wollweber F, Ponce-Toledo R, Xu J, Rittmann S, Klingl A, Pilhofer M, Schleper C

EMDB-15993:
cryo-tomogram of a Ca. L. ossiferum cell
Method: electron tomography / : Rodrigues-Oliveira T, Wollweber F, Ponce-Toledo R, Xu J, Rittmann S, Klingl A, Pilhofer M, Schleper C

EMDB-13694:
Substrate-engaged mycobacterial Proteasome-associated ATPase - focused 3D refinement (state A)
Method: single particle / : Jomaa A, Kavalchuk M, Weber-Ban E

EMDB-13695:
Open-gate mycobacterium 20S CP proteasome in complex MPA - global 3D refinement
Method: single particle / : Jomaa A, Kavalchuk M, Weber-Ban E

EMDB-13696:
Substrate-engaged mycobacterial Proteasome-associated ATPase - focused 3D refinement (state B)
Method: single particle / : Jomaa A, Kavalchuk M, Weber-Ban E

EMDB-13697:
Substrate-engaged mycobacterial Proteasome-associated ATPase in complex with open-gate 20S CP - composite map (state A)
Method: single particle / : Jomaa A, Kavalchuk M, Weber-Ban E

EMDB-13698:
Substrate-engaged mycobacterial Proteasome-associated ATPase in complex with open-gate 20S CP - composite map (state B)
Method: single particle / : Jomaa A, Kavalchuk M, Weber-Ban E

PDB-7px9:
Substrate-engaged mycobacterial Proteasome-associated ATPase - focused 3D refinement (state A)
Method: single particle / : Jomaa A, Kavalchuk M, Weber-Ban E

PDB-7pxa:
Open-gate mycobacterium 20S CP proteasome in complex MPA - global 3D refinement
Method: single particle / : Jomaa A, Kavalchuk M, Weber-Ban E

PDB-7pxb:
Substrate-engaged mycobacterial Proteasome-associated ATPase - focused 3D refinement (state B)
Method: single particle / : Jomaa A, Kavalchuk M, Weber-Ban E

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more