[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 240 items for (author: vinay & i)

EMDB-63984:
Ovorubin from the golden apple snail (Pomacea canaliculata)
Method: single particle / : Wangkanont K, Saw WG, Tran BN, Wilasluck P

PDB-9uaj:
Ovorubin from the golden apple snail (Pomacea canaliculata)
Method: single particle / : Wangkanont K, Saw WG, Tran BN, Wilasluck P

EMDB-49659:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

EMDB-49901:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

PDB-9nqj:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

PDB-9nxc:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

EMDB-63903:
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Method: single particle / : Liu P, Luo D

EMDB-63933:
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Method: single particle / : Liu P, Luo D

PDB-9u6e:
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Method: single particle / : Liu P, Luo D

PDB-9u7a:
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Method: single particle / : Liu P, Luo D

EMDB-51544:
Cryo-EM structure of mouse PMCA-NPTN complex captured in E2 state (BEF3)
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

EMDB-51545:
Cryo-EM structure of mouse PMCA-NPTN complex captured in E1 state without calcium
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

EMDB-51546:
Mouse PMCA-NPTN complex captured in E1-ATP state without calcium
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

EMDB-51547:
Cryo-EM structure of mouse PMCA-NPTN complex captured in E2-Pi state (ALF4)
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

EMDB-51548:
Cryo-EM structure of PMCA-NPTN complex captured in E1-Ca-ATP state
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

EMDB-51549:
Cryo-EM structure of mouse PMCA captured in E1-ATP in the presence of Calcium
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

EMDB-51558:
Cryo-EM structure of mouse PMCA captured in E2-P state (BEF3)
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

EMDB-51560:
Cryo-EM structure of Mouse PMCA-NPTN complex captured in E1-Ca state
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Shulte U, Constantin CE, Prubaum D, Zolles G, Fakler B

EMDB-51625:
Cryo-EM map of the complete PMCA-NPTN complex captured in E1-Ca state
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Shulte U, Constantin CE, Prubaum D, Zolles G, Fakler B

PDB-9gsd:
Cryo-EM structure of mouse PMCA-NPTN complex captured in E2 state (BEF3)
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

PDB-9gse:
Cryo-EM structure of mouse PMCA-NPTN complex captured in E1 state without calcium
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

PDB-9gsf:
Mouse PMCA-NPTN complex captured in E1-ATP state without calcium
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

PDB-9gsg:
Cryo-EM structure of mouse PMCA-NPTN complex captured in E2-Pi state (ALF4)
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

PDB-9gsh:
Cryo-EM structure of PMCA-NPTN complex captured in E1-Ca-ATP state
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

PDB-9gsi:
Cryo-EM structure of mouse PMCA captured in E1-ATP in the presence of Calcium
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

PDB-9gsy:
Cryo-EM structure of mouse PMCA captured in E2-P state (BEF3)
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Schulte U, Constantin CE, Prumbaum D, Zolles G, Fakler B

PDB-9gtb:
Cryo-EM structure of Mouse PMCA-NPTN complex captured in E1-Ca state
Method: single particle / : Vinayagam D, Raunser S, Sistel O, Shulte U, Constantin CE, Prubaum D, Zolles G, Fakler B

EMDB-51074:
TRPC5 in complex with photoswitch E-AzHC
Method: single particle / : Porav SA, Bon R, Muench S

EMDB-51076:
TRPC5 in complex with photoswitch Z-AzHC
Method: single particle / : Porav SA, Bon R, Muench S

EMDB-50850:
TRPC4 in complex with E-AzPico
Method: single particle / : Vinayagam D, Raunser S

EMDB-50851:
TRPC4 in complex with Z-AzPico
Method: single particle / : Vinayagam D, Raunser S

PDB-9fxl:
TRPC4 in complex with E-AzPico
Method: single particle / : Vinayagam D, Raunser S

PDB-9fxm:
TRPC4 in complex with Z-AzPico
Method: single particle / : Vinayagam D, Raunser S

EMDB-44435:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

PDB-9bcr:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

EMDB-43257:
AP-6 bound human TMEM175
Method: single particle / : Oh S, Hite RK

EMDB-43259:
2-PPA bound human TMEM175
Method: single particle / : Oh S, Hite RK

PDB-8vic:
AP-6 bound human TMEM175
Method: single particle / : Oh S, Hite RK

PDB-8vie:
2-PPA bound human TMEM175
Method: single particle / : Oh S, Hite RK

EMDB-44482:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

EMDB-44484:
Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs
Method: single particle / : Gorman J, Kwong PD

EMDB-44491:
Cryo-EM structure of the HIV-1 WITO IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

PDB-9ber:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

PDB-9bew:
Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs
Method: single particle / : Gorman J, Kwong PD

PDB-9bf6:
Cryo-EM structure of the HIV-1 WITO IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

EMDB-18723:
Cryo-EM structure of the cross-exon pre-B complex (tri-snRNP region)
Method: single particle / : Zhang Z, Kumar V, Dybkov O, Will CL, Zhong J, Ludwig S, Urlaub H, Kastner B, Stark H, Luehrmann R

EMDB-18724:
Cryo-EM structure of the cross-exon pre-B+5'ss complex (tri-snRNP region)
Method: single particle / : Zhang Z, Kumar V, Dybkov O, Will CL, Zhong J, Ludwig S, Urlaub H, Kastner B, Stark H, Luehrmann R

EMDB-18725:
Cryo-EM structure of the cross-exon pre-B+5'ss+ATPgammaS complex(tri-snRNP region)
Method: single particle / : Zhang Z, Kumar V, Dybkov O, Will CL, Zhong J, Ludwig S, Urlaub H, Kastner B, Stark H, Luehrmann R

EMDB-18726:
Cryo-EM structure of the cross-exon pre-B+5'ssLNG+ATPgammaS complex (tri-snRNP region)
Method: single particle / : Zhang Z, Kumar V, Dybkov O, Will CL, Zhong J, Ludwig S, Urlaub H, Kastner B, Stark H, Luehrmann R

EMDB-18727:
Cryo-EM structure of the cross-exon pre-B+AMPPNP complex (tri-snRNP region)
Method: single particle / : Zhang Z, Kumar V, Dybkov O, Will CL, Zhong J, Ludwig S, Urlaub H, Kastner B, Stark H, Luehrmann R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more