[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 14,981 items for (author: ve & t)

EMDB-48827:
hM4Di(GRANPA) in complex with mGsI and diphenhydramine
Method: single particle / : Mobbs JI, Thal DM

EMDB-48828:
Focused refinement map of hM4Di(GRANPA) in complex with mGsI and diphenhydramine
Method: single particle / : Mobbs JI, Thal DM

PDB-9n29:
hM4Di(GRANPA) in complex with mGsI and diphenhydramine
Method: single particle / : Mobbs JI, Thal DM

EMDB-77586:
Salmonella Flagellar Export Gate with FlhB in the context of the intact basal body
Method: single particle / : Johnson S, Johnson MK, Lea SM

EMDB-77588:
Salmonella Flagellar Export Apparatus FlhA transmembrane domain nonamer in the context of the intact basal body
Method: single particle / : Johnson S, Johnson MK, Lea SM

EMDB-77603:
Salmonella Flagellar Export Apparatus (FliPQR/FlhB/FlhA) in the context of the intact basal body
Method: single particle / : Johnson S, Johnson MK, Lea SM

PDB-36hu:
Salmonella Flagellar Export Gate with FlhB in the context of the intact basal body
Method: single particle / : Johnson S, Johnson MK, Lea SM

PDB-36hw:
Salmonella Flagellar Export Apparatus FlhA transmembrane domain nonamer in the context of the intact basal body
Method: single particle / : Johnson S, Johnson MK, Lea SM

PDB-36is:
Salmonella Flagellar Export Apparatus (FliPQR/FlhB/FlhA) in the context of the intact basal body
Method: single particle / : Johnson S, Johnson MK, Lea SM

EMDB-54252:
GluA4, Resting state, map of NTD domain
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-54249:
GluA4, Resting state, map of TMD domain
Method: single particle / : Vega-Gutierrez C, Herguedas B

EMDB-54427:
bacteriophage LUZ19 tail complex computed in C6 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Hlavenkova Z, Novacek J

EMDB-54599:
Portal and adaptor protein of bacteriophage LUZ19 computed in C12 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Novacek J, Hlavenkova Z

EMDB-54676:
asymmetric unit of bacteriophage LUZ19 head computed in I4 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Novacek J, Hlavenkova Z

EMDB-54818:
middle core protein of bacteriophage LUZ19 computed in C8 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Novacek J, Hlavenkova Z

EMDB-54828:
cap and middle core protein of bacteriophage LUZ19 computed in C4 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Novacek J, Hlavenkova Z

EMDB-55352:
Special vertex of bacteriophage LUZ19 computed in C1 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Novacek J, Hlavenkova Z

EMDB-56773:
portal - core interface of bacteriophage LUZ19 computed in C4 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Novacek J, Hlavenkova Z

PDB-28sd:
portal - core interface of bacteriophage LUZ19 computed in C4 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Novacek J, Hlavenkova Z

PDB-9s0y:
bacteriophage LUZ19 tail complex computed in C6 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Hlavenkova Z, Novacek J

PDB-9s5j:
Portal and adaptor protein of bacteriophage LUZ19 computed in C12 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Novacek J, Hlavenkova Z

PDB-9s9b:
asymmetric unit of bacteriophage LUZ19 head computed in I4 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Novacek J, Hlavenkova Z

PDB-9sfd:
middle core protein of bacteriophage LUZ19 computed in C8 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Novacek J, Hlavenkova Z

PDB-9sfn:
cap and middle core protein of bacteriophage LUZ19 computed in C4 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Novacek J, Hlavenkova Z

PDB-9sys:
Special vertex of bacteriophage LUZ19 computed in C1 symmetry
Method: single particle / : Stefanik Sobotkova A, Cienikova Z, Mironova Y, Fuzik T, Plevka P, Novacek J, Hlavenkova Z

PDB-9vjd:
Cucumber Green Mottle Mosaic Virus (CGMMV) coat protein
Method: helical / : Chatterjee A, Venkatasubramanian A, Jailani AK, Das U, Ragunath VK, Mandal B, Datta PP

EMDB-73108:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-73109:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

EMDB-73110:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymj:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymk:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

PDB-9yml:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-54410:
Icosahedral reconstruction of Chikungunya virus-like particle
Method: single particle / : Song X, Kim YC, Huiskonen JT

EMDB-54411:
Chikungunya virus-like particle trimer 1
Method: single particle / : Song X, Kim YC, Huiskonen JT

EMDB-54412:
Chikungunya virus-like particle trimer 2
Method: single particle / : Song X, Kim YC, Huiskonen JT

EMDB-54413:
Composite density map of Chikungunya virus-like particle
Method: single particle / : Song X, Kim YC, Huiskonen JT

EMDB-72520:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to phosphorylated eIF2alpha (NTD)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72521:
eIF2B lacking the latch helix bound to ISRACT-01 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72522:
eIF2B lacking the latch helix bound to ISRACT-02 (Active state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72523:
eIF2B lacking the latch helix bound to ISRACT-02 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5r:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to phosphorylated eIF2alpha (NTD)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5s:
eIF2B lacking the latch helix bound to ISRACT-01 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5t:
eIF2B lacking the latch helix bound to ISRACT-02 (Active state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5u:
eIF2B lacking the latch helix bound to ISRACT-02 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-51874:
Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

PDB-9h52:
Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

EMDB-56861:
In situ ribosome from HeLa cells
Method: subtomogram averaging / : Gemin O, Babenko A, Papp G

EMDB-54627:
Local refinement of a PSI monomer of A. marina NIES-2412
Method: single particle / : Consoli G, Leong HF

EMDB-54956:
Trimeric photosystem I of Acaryochloris marina NIES-2412
Method: single particle / : Leong HF, Consoli G

PDB-9s6p:
Local refinement of a PSI monomer of A. marina NIES-2412
Method: single particle / : Consoli G, Leong HF

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more