[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 38 items for (author: thomas & hf)

EMDB-75112:
SK3D-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75120:
OX1-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75121:
SK5A-Matured apo state in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75122:
SK5B-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75123:
SK3D-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75127:
SK5G-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75128:
OX1-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75129:
SK5A-Matured glycine/glutamate in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75134:
SK5G-Germline
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75136:
SK5A-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75138:
SK5B-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-52762:
Structure of Far-Red Photosystem I from C. thermalis PCC 7203
Method: single particle / : Consoli G, Tufaill F, Murray JW, Fantuzzi A, Rutherford AW

EMDB-50063:
Structure of Far-Red Photosystem I from C. thermalis PCC 7203
Method: single particle / : Consoli G, Tufaill F, Murray JW, Fantuzzi A, Rutherford AW

EMDB-51318:
Structure of the HrpA-bound E. coli disome, Class I
Method: single particle / : Esser HF, Berninghausen O, Becker T, Beckmann R

EMDB-51340:
Structure of the HrpA-bound E. coli disome, Class II
Method: single particle / : Esser HF, Berninghausen O, Becker T, Beckmann R

EMDB-40789:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

EMDB-40790:
Map focused on acidic patch BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

EMDB-40791:
Overall map of BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

EMDB-3967:
In situ cryo-electron tomogram from Chlamydomonas reinhardtii of the cellular environment around the nuclear envelope
Method: electron tomography / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3932:
In situ subtomogram average of the Chlamydomonas double-capped 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3933:
In situ subtomogram average of the Chlamydomonas single-capped 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3934:
In situ subtomogram average of the Chlamydomonas ground state 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3935:
In situ subtomogram average of the Chlamydomonas processing state 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3936:
In situ subtomogram average of the Chlamydomonas membrane-tethered 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3937:
In situ subtomogram average of the Chlamydomonas basket-tethered 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3938:
In situ subtomogram average of the Chlamydomonas free 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3939:
Local refinement of the extra density that tethers 26S proteasomes to the NPC basket
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3940:
Local refinement of the extra density that tethers 26S proteasomes to the inner nuclear membrane
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3791:
Cryotomogram of purified Amoebophilus asiaticus cells
Method: electron tomography / : Boeck D, Medeiros JM

EMDB-3793:
Cryotomogram of hexagonal arrays of contractile injection systems
Method: electron tomography / : Boeck D, Medeiros JM

EMDB-3794:
Thinned cryotomogram of hexagonal arrays of contractile injection systems
Method: electron tomography / : Boeck D, Medeiros JM

EMDB-3795:
Subtomogram average of extended contractile injection systems
Method: subtomogram averaging / : Boeck D, Medeiros JM

EMDB-3796:
Subtomogram average of contracted contractile injection systems
Method: subtomogram averaging / : Boeck D, Medeiros JM

EMDB-3797:
Cryotomogram of intracellular amoebophili 0.25 hours post infection
Method: electron tomography / : Boeck D, Medeiros JM

EMDB-3798:
Cryotomogram of intracellular amoebophili 0.5 hours post infection
Method: electron tomography / : Boeck D, Medeiros JM

EMDB-3799:
Cryotomogram of intracellular amoebophili 0.75 hours post infection
Method: electron tomography / : Boeck D, Medeiros JM

EMDB-3800:
Cryotomogram of intracellular amoebophili 2 hours post infection
Method: electron tomography / : Boeck D, Medeiros JM

EMDB-3801:
Cryotomogram of intracellular amoebophili 1 hour post infection
Method: electron tomography / : Boeck D, Medeiros JM

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more