[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 90 items for (author: tan & gk)

EMDB-18482:
Herpes simplex virus 1 capsid (WT) vertices in perinuclear NEC-coated vesicles determined in situ
Method: subtomogram averaging / : Mironova Y, Prazak V, Vasishtan D

EMDB-18484:
Herpes simplex virus 1 nuclear egress complex (WT) determined in situ from perinuclear vesicles
Method: subtomogram averaging / : Mironova Y, Prazak V, Vasishtan D

EMDB-17974:
Pseudorabies virus cytosolic C-capsid (US3 KO) vertices determined in situ
Method: subtomogram averaging / : Prazak V, Grange M, Vasishtan D

EMDB-17975:
Pseudorabies virus primary enveloped (perinuclear) C-capsid (US3 KO) vertices determined in situ
Method: subtomogram averaging / : Prazak V, Grange M, Vasishtan D

EMDB-17976:
Pseudorabies nuclear C-capsids (US3 KO) vertices determined in situ
Method: subtomogram averaging / : Prazak V, Grange M, Vasishtan D

EMDB-18473:
Subtomogram average of pseudorabies virus nuclear egress complex helical form (UL31/34) determined in situ
Method: subtomogram averaging / : Prazak V, Grange M, Vasishtan D

EMDB-18474:
Subtomogram average of pseudorabies virus nuclear egress complex (UL31/34) determined in situ
Method: subtomogram averaging / : Prazak V, Grange M, Vasishtan D

EMDB-18479:
Pseudorabies virus cytosolic C-capsid (WT) vertices determined in situ
Method: subtomogram averaging / : Mironova Y, Prazak V, Vasishtan D

EMDB-18480:
Pseudorabies virus nuclear C-capsid (WT) vertices determined in situ
Method: subtomogram averaging / : Mironova Y, Prazak V, Vasishtan D

EMDB-18481:
Herpes simplex virus 1 cytosolic C-capsid (WT) vertices determined in situ
Method: subtomogram averaging / : Mironova Y, Prazak V, Vasishtan D

EMDB-18483:
Herpes simplex virus 1 nuclear C-capsid (WT) vertices determined in situ
Method: subtomogram averaging / : Mironova Y, Prazak V, Vasishtan D

EMDB-16083:
Munc13-SNAP25 cryo-ET dataset, synapse tomo WT 108 (id: m13_ctrl_108)
Method: electron tomography / : Papantoniou C, Lucic V

EMDB-16084:
Munc13-SNAP25 cryo-ET dataset, synapse tomo Munc13 DHet 115 (id: m13_dhet_115)
Method: electron tomography / : Papantoniou C, Lucic V

EMDB-16085:
Munc13-SNAP25 cryo-ET dataset, synapse tomo Munc13 DKO 102 (id: m13_dko_102)
Method: electron tomography / : Papantoniou C, Lucic V

EMDB-28726:
Rat 80S ribosome purified from brain RNA granules. Class 1 40S subunit 2_5A resolution
Method: single particle / : Ortega J

EMDB-28727:
Rat 80S ribosome purified from brain RNA granules. Class 1 60S subunit 2_5A resolution.
Method: single particle / : Ortega J

EMDB-26517:
Rat 80S ribosome purified from brain RNA granules. Class 2 40S subunit.
Method: single particle / : Ortega J

EMDB-26518:
Rat 80S ribosome purified from brain RNA granules. Class 2 60S subunit.
Method: single particle / : Ortega J

EMDB-29538:
Rat 80S ribosome purified from brain RNA granules. Class 1 80S consensus
Method: single particle / : Ortega J

EMDB-29539:
Rat 80S ribosome purified from brain RNA granules. Class 2 80S consensus
Method: single particle / : Ortega J

EMDB-34540:
Type VI secretion system effector RhsP in its post-autoproteolysis and monomeric form
Method: single particle / : Tang L, Dong SQ, Rasheed N, Wu HW, Zhou NK, Li HD, Wang ML, Zheng J, He J, Chao WCH

EMDB-34541:
Type VI secretion system effector RhsP in its pre-autoproteolysis and monomeric form
Method: single particle / : Tang L, Dong SQ, Rasheed N, Wu HW, Zhou NK, Li HD, Wang ML, Zheng J, He J, Chao WCH

EMDB-34542:
Type VI secretion system effector RhsP in its post-autoproteolysis and dimeric form
Method: single particle / : Tang L, Dong SQ, Rasheed N, Wu HW, Zhou NK, Li HD, Wang ML, Zheng J, He J, Chao WCH

PDB-8h8a:
Type VI secretion system effector RhsP in its post-autoproteolysis and monomeric form
Method: single particle / : Tang L, Dong SQ, Rasheed N, Wu HW, Zhou NK, Li HD, Wang ML, Zheng J, He J, Chao WCH

PDB-8h8b:
Type VI secretion system effector RhsP in its pre-autoproteolysis and monomeric form
Method: single particle / : Tang L, Dong SQ, Rasheed N, Wu HW, Zhou NK, Li HD, Wang ML, Zheng J, He J, Chao WCH

PDB-8h8c:
Type VI secretion system effector RhsP in its post-autoproteolysis and dimeric form
Method: single particle / : Tang L, Dong SQ, Rasheed N, Wu HW, Zhou NK, Li HD, Wang ML, Zheng J, He J, Chao WCH

EMDB-32839:
CryoEM structure of sNS1 complexed with Fab5E3
Method: single particle / : Shu B, Lok SM

EMDB-32840:
CryoEM structure of a dimer of loose sNS1 tetramer
Method: single particle / : Shu B, Lok SM

EMDB-32841:
CryoEM structure of stable sNS1 tetramer
Method: single particle / : Shu B, Ooi JSG, Lok SM

EMDB-32842:
CryoEM structure of loose sNS1 tetramer
Method: single particle / : Shu B, Lok SM

EMDB-32843:
CryoEM structure of sNS1 hexamer
Method: single particle / : Shu B, Ooi JSG

PDB-7wur:
CryoEM structure of sNS1 complexed with Fab5E3
Method: single particle / : Shu B, Lok SM

PDB-7wus:
CryoEM structure of a dimer of loose sNS1 tetramer
Method: single particle / : Shu B, Lok SM

PDB-7wut:
CryoEM structure of stable sNS1 tetramer
Method: single particle / : Shu B, Ooi JSG, Lok SM

PDB-7wuu:
CryoEM structure of loose sNS1 tetramer
Method: single particle / : Shu B, Lok SM

PDB-7wuv:
CryoEM structure of sNS1 hexamer
Method: single particle / : Shu B, Ooi JSG, Lok SM

EMDB-14885:
OMI-42 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-14886:
OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE RBD (local refinement)
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-14887:
OMI-2 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-14910:
OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-7zr7:
OMI-42 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-7zr8:
OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE RBD (local refinement)
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-7zr9:
OMI-2 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-7zrc:
OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-22995:
Spike protein trimer
Method: single particle / : Asarnow D, Faust B, Bohn M, Bulkley D, Manglik A, Craik CS, Cheng Y

EMDB-22993:
SARS-CoV-2 spike glycoprotein:Fab 5A6 complex I
Method: single particle / : Asarnow D, Charles C, Cheng Y

EMDB-22994:
SARS-CoV-2 Spike protein in complex with Fab 2H4
Method: single particle / : Asarnow D, Charles C, Cheng Y

EMDB-22997:
SARS-CoV-2 spike glycoprotein:Fab 3D11 complex
Method: single particle / : Asarnow D, Charles C, Cheng Y

EMDB-23707:
SARS-CoV-2 Spike:5A6 Fab complex I focused refinement
Method: single particle / : Asarnow D, Cheng Y

EMDB-23709:
SARS-CoV-2 Spike:Fab 3D11 complex focused refinement
Method: single particle / : Asarnow D, Cheng Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more