[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 913 items for (author: suo & y)

EMDB-54094:
Cryo-EM structure of the human potassium chloride cotransporter T906A/T1007A phospho-knockout mutants KCC2b bound ATP in LMNG (outward-facing state, dimer)
Method: single particle / : Matsuoka R, Oswald C, Jazayeri A, Duerr KL

PDB-9rnj:
Cryo-EM structure of the human potassium chloride cotransporter T906A/T1007A phospho-knockout mutants KCC2b bound ATP in LMNG (outward-facing state, dimer)
Method: single particle / : Matsuoka R, Oswald C, Jazayeri A, Duerr KL

EMDB-65237:
IF1 bound bovine F-ATP synthase planar dimer
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65238:
IF1 bound bovine ATP synthase tetramer, C2 symmetry imposed
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65239:
IF1 bound bovine ATP synthase monomer: rotary state 1, F1 focused map
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65240:
IF1 bound bovine ATP synthase tetramer, no symmetry imposed
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65241:
IF1 bound bovine ATP synthase tetramer: Fo focused map of the state 1 protomer of dimer B
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65242:
IF1 bound bovine ATP synthase monomer, rotary state 2
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65243:
IF1 bound bovine ATP synthase monomer, rotary state 2, F1 focused map
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65244:
IF1 bound bovine ATP synthase monomer: rotary state 2, Fo focused map
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65245:
IF1 bound bovine ATP synthase monomer: rotary state 3
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65246:
IF1 bound bovine ATP synthase monomer: rotary state 3, F1 focused map
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65247:
IF1 bound bovine ATP synthase monomer: rotary state 3, Fo focused map
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65248:
IF1 bound bovine ATP synthase monomer: rotary state 1
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65249:
IF1 bound bovine ATP synthase monomer: rotary state 1, Fo focused map
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

PDB-9vpb:
Cryo-EM structure of the IF1 bound bovine F-ATP synthase planar dimer
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

PDB-9vpc:
Cryo-EM structure of the IF1 bound bovine ATP synthase tetramer
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

PDB-9vpd:
Cryo-EM structure of the IF1 bound bovine ATP synthase monomer: rotary state 1, F1 focused map
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-64603:
RNA polymerase II elongation complex stalled at SHL(-0.5) in the hexasome of the overlapping dinucleosome
Method: single particle / : Chen Z, Ho C, Tanaka H, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-64642:
RNA polymerase II elongation complex stalled at SHL(-6) in the hexasome of the overlapping dinucleosome
Method: single particle / : Chen Z, Ho C, Tanaka H, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9uxw:
RNA polymerase II elongation complex stalled at SHL(-0.5) in the hexasome of the overlapping dinucleosome
Method: single particle / : Chen Z, Ho C, Tanaka H, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9uz9:
RNA polymerase II elongation complex stalled at SHL(-6) in the hexasome of the overlapping dinucleosome
Method: single particle / : Chen Z, Ho C, Tanaka H, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-71429:
PCP bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71430:
PCP bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71431:
3-OH-PCP bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71432:
(S)-ketamine bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71433:
(S)-ketamine bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71434:
Ligand-free kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa1:
PCP bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa2:
PCP bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa3:
3-OH-PCP bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa4:
(S)-ketamine bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa5:
(S)-ketamine bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa6:
Ligand-free kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-65634:
Cryo-EM structure of Enterovirus-D68 MO strain virus-like particle
Method: single particle / : Senpuku K, Hirose M, Ito T, Kato T, Yshioka Y

PDB-9w4i:
Cryo-EM structure of Enterovirus-D68 MO strain virus-like particle
Method: single particle / : Senpuku K, Hirose M, Ito T, Kato T, Yshioka Y

EMDB-75011:
MP1104-bound Kappa Opioid Receptor in complex with beta-arrestin1
Method: single particle / : Han J, Chen M, Che T

PDB-9zzo:
MP1104-bound Kappa Opioid Receptor in complex with beta-arrestin1
Method: single particle / : Han J, Chen M, Che T

EMDB-64974:
Cryo-EM structure of the aspartate:alanine antiporter AspT WT Consensus map
Method: single particle / : Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S

EMDB-64975:
Cryo-EM structure of the aspartate:alanine antiporter AspT WT_TM_Local Refinment
Method: single particle / : Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S

EMDB-64976:
Cryo-EM structure of the aspartate:alanine antiporter AspT WT_SD_Local refinement
Method: single particle / : Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S

EMDB-64225:
RNA polymerase II elongation complex stalled at SHL(-4) of the H3-H4 octasome
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-64226:
RNA polymerase II elongation complex stalled at SHL(-0.5) of the H3-H4 octasome (tetrasome)
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9ujs:
RNA polymerase II elongation complex stalled at SHL(-4) of the H3-H4 octasome
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9ujt:
RNA polymerase II elongation complex stalled at SHL(-0.5) of the H3-H4 octasome (tetrasome)
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-65577:
Cryo-EM structure of FoF1-ATPase monomer state 1 on the bovine heart submitochondrial particles (FoF1-1)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65578:
Cryo-EM structure of FoF1-ATPase monomer state 3 on the bovine heart submitochondrial particles (FoF1-2)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65579:
Cryo-EM structure of Fo domain of FoF1-ATPase monomer state on the bovine heart submitochondrial particles
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65580:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, open
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65581:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, closed
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more