[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 875 items for (author: suo & y)

EMDB-64974:
Cryo-EM structure of the aspartate:alanine antiporter AspT WT Consensus map
Method: single particle / : Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S

EMDB-64975:
Cryo-EM structure of the aspartate:alanine antiporter AspT WT_TM_Local Refinment
Method: single particle / : Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S

EMDB-64976:
Cryo-EM structure of the aspartate:alanine antiporter AspT WT_SD_Local refinement
Method: single particle / : Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S

EMDB-64225:
RNA polymerase II elongation complex stalled at SHL(-4) of the H3-H4 octasome
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-64226:
RNA polymerase II elongation complex stalled at SHL(-0.5) of the H3-H4 octasome (tetrasome)
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9ujs:
RNA polymerase II elongation complex stalled at SHL(-4) of the H3-H4 octasome
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9ujt:
RNA polymerase II elongation complex stalled at SHL(-0.5) of the H3-H4 octasome (tetrasome)
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-65577:
Cryo-EM structure of FoF1-ATPase monomer state 1 on the bovine heart submitochondrial particles (FoF1-1)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65578:
Cryo-EM structure of FoF1-ATPase monomer state 3 on the bovine heart submitochondrial particles (FoF1-2)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65579:
Cryo-EM structure of Fo domain of FoF1-ATPase monomer state on the bovine heart submitochondrial particles
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65580:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, open
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65581:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, closed
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65583:
Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-1
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65584:
Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-2
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65585:
Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-A
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65586:
Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-B
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65587:
Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-C
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2r:
Cryo-EM structure of FoF1-ATPase monomer state 1 on the bovine heart submitochondrial particles (FoF1-1)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2s:
Cryo-EM structure of FoF1-ATPase monomer state 3 on the bovine heart submitochondrial particles (FoF1-2)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2t:
Cryo-EM structure of Fo domain of FoF1-ATPase monomer state on the bovine heart submitochondrial particles
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2u:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, open
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2v:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, closed
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2x:
Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-1
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2y:
Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-2
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2z:
Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-A
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-63920:
Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state2
Method: single particle / : Nakano A, Kishikawa J, Nishida Y, Shigematsu H, Gerle C, Mitsuoka M, Yokoyama K

EMDB-63921:
Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state3
Method: single particle / : Nakano A, Kishikawa J, Nishida Y, Shigematsu H, Gerle C, Mitsuoka M, Yokoyama K

PDB-9u6r:
Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state2
Method: single particle / : Nakano A, Kishikawa J, Nishida Y, Shigematsu H, Gerle C, Mitsuoka M, Yokoyama K

PDB-9u6s:
Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state3
Method: single particle / : Nakano A, Kishikawa J, Nishida Y, Shigematsu H, Gerle C, Mitsuoka M, Yokoyama K

EMDB-47752:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-47805:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e93:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e9v:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-49844:
Structure of Nanchung-Inactive-Calmodulin in apo state
Method: single particle / : Fedor JG, Lee SY

EMDB-49845:
Structure of Nanchung-Inactive-Calmodulin in complex with Nicotinamide
Method: single particle / : Fedor JG, Lee SY

EMDB-49846:
Structure of Nanchung-Inactive-Calmodulin in complex with Nicotinamide, EDTA
Method: single particle / : Fedor JG, Lee SY

EMDB-49847:
Structure of Nanchung-Inactive-Calmodulin in complex with Afidopyropen and calcium
Method: single particle / : Fedor JG, Lee SY

EMDB-49848:
Structure of Nanchung-Inactive-Calmodulin in complex with Afidopyropen, EDTA
Method: single particle / : Fedor JG, Lee SY

EMDB-49849:
Structure of a pentameric Nanchung in complex with Afidopyropen
Method: single particle / : Fedor JG, Lee SY

PDB-9nvn:
Structure of Nanchung-Inactive-Calmodulin in apo state
Method: single particle / : Fedor JG, Lee SY

PDB-9nvo:
Structure of Nanchung-Inactive-Calmodulin in complex with Nicotinamide
Method: single particle / : Fedor JG, Lee SY

PDB-9nvp:
Structure of Nanchung-Inactive-Calmodulin in complex with Nicotinamide, EDTA
Method: single particle / : Fedor JG, Lee SY

PDB-9nvq:
Structure of Nanchung-Inactive-Calmodulin in complex with Afidopyropen and calcium
Method: single particle / : Fedor JG, Lee SY

PDB-9nvr:
Structure of Nanchung-Inactive-Calmodulin in complex with Afidopyropen, EDTA
Method: single particle / : Fedor JG, Lee SY

PDB-9nvs:
Structure of a pentameric Nanchung in complex with Afidopyropen
Method: single particle / : Fedor JG, Lee SY

EMDB-39009:
positive allosteric modulator(BMS986187)-bound delta-opioid receptor-Gi complex
Method: single particle / : Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE

PDB-8y71:
positive allosteric modulator(BMS986187)-bound delta-opioid receptor-Gi complex
Method: single particle / : Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE

EMDB-67107:
Cryo-EM structure of the human A2A adenosine receptor in complex with a Fab antibody fragment
Method: single particle / : Miyashita Y, Konno R, Ogasawara S, Okuda Y, Takamuku Y, Moriya T, Saito T, Murata T, Ohara O, Kawashima Y

PDB-9xqb:
Cryo-EM structure of the human A2A adenosine receptor in complex with a Fab antibody fragment
Method: single particle / : Miyashita Y, Konno R, Ogasawara S, Okuda Y, Takamuku Y, Moriya T, Saito T, Murata T, Ohara O, Kawashima Y

EMDB-62849:
Gi-bound kappa opioid receptor in complex with dynorphin and positive allosteric modulator MPAM-15
Method: single particle / : Zhuang Y, Wang Y, Xu Y, Luo P, Xu HE

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more