[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 648 items for (author: song & as)

EMDB-63646:
I-shaped amyloid fiber (40) of Tottori (D7N) mutant
Method: helical / : Burton-Smith RN, Murata K

EMDB-63647:
V-shaped amyloid fiber (40) of Tottori (D7N) mutant (type 1)
Method: helical / : Burton-Smith RN, Murata K

EMDB-63648:
V'-shaped short pitch amyloid fiber (40) of Tottori (D7N) mutant
Method: helical / : Burton-Smith RN, Murata K

EMDB-64274:
V-shaped amyloid fiber (40) of Tottori (D7N) mutant (type 2)
Method: helical / : Burton-Smith RN, Murata K

PDB-9m5p:
I-type amyloid fibril (40) of Tottori (D7N) mutant
Method: helical / : Burton-Smith RN, Murata K

PDB-9m5q:
V-type (V1-type) amyloid fibril (40) of Tottori (D7N) mutant
Method: helical / : Burton-Smith RN, Murata K

PDB-9m5r:
ES-type (short pitch) amyloid fibril (40) of Tottori (D7N) mutant
Method: helical / : Burton-Smith RN, Murata K

PDB-9umh:
V-type (V2-type) amyloid fibril (40) of Tottori (D7N) mutant
Method: helical / : Burton-Smith RN, Murata K

EMDB-51662:
Subtomogram average of fascin-actin complex
Method: subtomogram averaging / : Song X, Corbalan-Garcia S, Huiskonen JT

EMDB-51663:
Subtomogram average of three fascins in complex with two actin filaments
Method: subtomogram averaging / : Song X, Corbalan-Garcia S, Huiskonen JT

EMDB-52503:
Cryo-tomogram of fascin-actin bundles reconstituted in vitro
Method: electron tomography / : Song X, Corbalan-Garcia S, Huiskonen JT

EMDB-70353:
Clone 2.1 Fab in complex with chicken IgY CH2 domain (local refinement)
Method: single particle / : Ozorowski G, Alkutkar T, Ward AB

EMDB-44910:
M1A Midnolin-Proteasome (with Ubl)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44927:
M2A Midnolin-Proteasome (translocating)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44928:
M2A Midnolin Proteasome (translocating, focused on PSMD2)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44929:
M2B Midnolin-Proteasome (translocating)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44930:
M1B Midnolin-Proteasome
Method: single particle / : Gao J, Yip MCJ, Shao S

PDB-9cq0:
Event-based electron counting microED structure of thiostrepton from a single crystal
Method: electron crystallography / : Vlahakis NW, Qu S, Richards LS, deMoraes LS, Nelson HM, Rodriguez JA

PDB-9i2q:
Wzc-K540M-3YE MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

PDB-9i2r:
Wzc-K540M-3YE MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50042:
Wzc-K540M-2YE MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50043:
Wzc-K540M-2YE MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50044:
Wzc-K540M-3YE MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50045:
Wzc-K540M-3YE MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50046:
Wzc-K540M-3YE-N711Y MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50047:
Wzc-K540M-3YE-N711Y MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

PDB-9exo:
Wzc-K540M-2YE MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

PDB-9exp:
Wzc-K540M-2YE MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

PDB-9exq:
Wzc-K540M-3YE-N711Y MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

PDB-9exr:
Wzc-K540M-3YE-N711Y MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-47018:
Subtomogram average of hemagglutinin from influenza A virions
Method: subtomogram averaging / : Huang QJ, Schiffer CA

EMDB-47027:
Subtomogram average of hemagglutinin from influenza A virions incubated with 6.5 mM LSTc
Method: subtomogram averaging / : Huang QJ, Schiffer CA

EMDB-47028:
Subtomogram average of hemagglutinin with closest HA neighbour from influenza A virions incubated with 6.5 mM LSTc
Method: subtomogram averaging / : Huang QJ, Schiffer CA

EMDB-47029:
Subtomogram average of hemagglutinin with second closest HA neighbour from influenza A virions incubated with 6.5 mM LSTc
Method: subtomogram averaging / : Huang QJ, Schiffer CA

EMDB-47030:
Subtomogram average of hemagglutinin with closest HA neighbour from influenza A virions incubated with 100 uM LSTc
Method: subtomogram averaging / : Huang QJ, Schiffer CA

EMDB-49095:
Representative tomogram of LSTc-bound influenza virions
Method: electron tomography / : Huang QJ, Song K, Schiffer CA, Somasundaran M

EMDB-49096:
Representative tomogram of influenza (PR8/34)
Method: electron tomography / : Huang QJ, Song K, Schiffer CA, Somasundaran M

PDB-9n8p:
Subtomogram average of dimers of influenza HA trimers
Method: subtomogram averaging / : Huang QJ, Song K, Schiffer CA, Somasundaran M

EMDB-48724:
Lecithin:Cholesterol Acyltransferase Bound to Apolipoprotein A-I dimer in HDL
Method: single particle / : Coleman B, Bedi S, Hill JH, Morris J, Manthei KA, Hart RC, He Y, Shah AS, Jerome WG, Vaisar T, Bornfeldt KE, Song H, Segrest JP, Heinecke JW, Aller SG, Tesmer JJG, Davidson S

PDB-9mxz:
Lecithin:Cholesterol Acyltransferase Bound to Apolipoprotein A-I dimer in HDL
Method: single particle / : Coleman B, Bedi S, Hill JH, Morris J, Manthei KA, Hart RC, He Y, Shah AS, Jerome WG, Vaisar T, Bornfeldt KE, Song H, Segrest JP, Heinecke JW, Aller SG, Tesmer JJG, Davidson S

EMDB-46722:
Body 1 from multibody refinement of the single-stranded TERRAmut RNA-bound PRC2 dimer
Method: single particle / : Jiarui JS, Vignesh VK

EMDB-46726:
Body 2 from multibody refinement of the single-stranded TERRAmut RNA-bound PRC2 dimer
Method: single particle / : Jiarui JS, Vignesh VK

EMDB-46751:
Single-stranded RNA-mediated PRC2 dimer
Method: single particle / : Song JS, Kasinath VK

PDB-9dch:
Single-stranded RNA-mediated PRC2 dimer
Method: single particle / : Song JS, Kasinath VK

EMDB-61492:
Cryo-EM structure of Mycobacterium tuberculosis transcription activation complex with unphosphated PhoP
Method: single particle / : Lin W, Feng Y

EMDB-62293:
Cryo-EM structure of Mycobacterium tuberculosis transcription activation complex with two PhoP molecules(composite map)
Method: single particle / : Lin W, Feng Y

EMDB-62294:
Cryo-EM structure of Mycobacterium tuberculosis transcription activation complex with four PhoP molecules (composite map)
Method: single particle / : Lin W, Feng Y

EMDB-62295:
Cryo-EM structure of Mycobacterium tuberculosis transcription activation complex with six PhoP molecules (composite map)
Method: single particle / : Lin W, Feng Y

PDB-9ji2:
Cryo-EM structure of Mycobacterium tuberculosis transcription activation complex with unphosphated PhoP
Method: single particle / : Lin W, Feng Y

PDB-9ket:
Cryo-EM structure of Mycobacterium tuberculosis transcription activation complex with two PhoP molecules(composite map)
Method: single particle / : Lin W, Feng Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more