[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 80 items for (author: sherman & mb)

EMDB-73228:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode I
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73231:
Cryo-EM map of D614G spike, 1-up-RBD
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73244:
SARS-CoV-2 D614G spike, 3-RBD-downn
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73245:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, Subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73247:
Fab-14/SARS-CoV-2 D614G spike complex, Mode V conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73260:
Fab-14/SARS-CoV-2 D614G spike complex, Mode I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73263:
Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73265:
Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup II conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73267:
Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup III conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73270:
Fab-14/SARS-CoV-2 Omicron BA.1 spike complex
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73271:
SARS-CoV-2 Omicron BA.1 spike, 3-RBD-down
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73273:
SARS-CoV-2 Omicron BA.1 spike, 1-RBD-up
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73290:
Fab-14/SARS-CoV-2 D614G spike complex, Mode III conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73291:
Unbound SARS-CoV-2 D614G spike
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73292:
Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, subgroup II conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73306:
Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-47837:
Murine norovirus allosteric escape mutant D348E
Method: single particle / : Smith TJ, Sherman M

EMDB-47838:
Murine norovirus allosteric V339I escape mutant + calcium
Method: single particle / : Smith TJ, Sherman MB

EMDB-47839:
MNV Allosteric escape mutant V339I + GCDCA
Method: single particle / : Smith TJ, Sherman M

EMDB-47840:
Murine Norovirus MNV-1 with allosteric escape mutation V339I
Method: single particle / : Smith TJ, Sherman M

EMDB-27847:
Mouse norovirus strain CR6, attenuated
Method: single particle / : Smith TJ, Sherman M

EMDB-27849:
Mouse norovirus strain CR6 at pH 5.0
Method: single particle / : Smith TJ

EMDB-27171:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (local refinement of subunit B)
Method: single particle / : Park J, Yin YW

EMDB-27154:
Human mitochondrial DNA polymerase gamma ternary complex with GC basepair
Method: single particle / : Park J, Yin YW

EMDB-27155:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in replication conformer
Method: single particle / : Park J, Yin YW

EMDB-27163:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in intermediate conformer
Method: single particle / : Park J, Yin YW

EMDB-27169:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (consensus)
Method: single particle / : Park J, Yin YW

EMDB-27170:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (local refinement of subunit A and primer/template DNA)
Method: single particle / : Park J, Yin YW

EMDB-27172:
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (composite)
Method: single particle / : Park J, Yin YW

EMDB-27319:
Mouse Norovirus strain WU23
Method: single particle / : Smith TJ

EMDB-27321:
Mouse norovirus strain WU23 + 10mM GCDCA
Method: single particle / : Smith TJ

EMDB-27322:
Murine norovirus strain WU23 at pH 5
Method: single particle / : Smith TJ

EMDB-26553:
N2 sub-domain of IF2 bound to the 30S subunit in the Pseudomonas aeruginosa 70S ribosome initiation complex (focused classification and refinement)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

EMDB-26628:
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (I-A)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

EMDB-26629:
Compact IF2-GDP bound to the Pseudomonas aeruginosa 70S ribosome initiation complex, from focused classification and refinement (I-A)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

EMDB-26630:
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

EMDB-26631:
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (I-B)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

EMDB-26632:
Compact IF2-GDP bound to the Pseudomonas aeruginosa 70S ribosome initiation complex, from focused classification and refinement (I-B)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

EMDB-26633:
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

EMDB-26634:
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

EMDB-26635:
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Method: single particle / : Basu RS, Sherman MB, Gagnon MG

EMDB-24211:
Mouse norovirus (MNV-1) capsid at pH 5.0
Method: single particle / : Smith TJ

EMDB-24226:
Mouse norovirus (MNV-1) capsid at pH 7.5
Method: single particle / : Smith TJ

EMDB-23187:
Mouse Norovirus Protruding domain complexed with neutralizing Fab fragment from mAb A6.2
Method: single particle / : Smith TJ, Sherman MB

EMDB-9204:
Cucumber Leaf Spot Virus
Method: single particle / : Sherman MB, Smith TJ

EMDB-9205:
Red Clover Necrotic Mosaic Virus
Method: single particle / : Sherman MB, Smith TJ

EMDB-20250:
Mouse norovirus complexed with GCDCA
Method: single particle / : Smith TJ

EMDB-20251:
mouse norovirus complexed with TCA
Method: single particle / : Smith TJ

EMDB-20252:
Bile salts alter the mouse norovirus capsid conformation; possible implications for cell attachment and immune evasion.
Method: single particle / : Smith TJ

EMDB-20253:
Bile salts alter the mouse norovirus capsid conformation; possible implications for cell attachment and immune evasion.
Method: single particle / : Smith TJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more