[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 213 items for (author: sabrina & g)

EMDB-55395:
Atg2-Atg18 complex from yeast
Method: single particle / : Chumpen Ramirez S, Shvarev D, Vargas Duarte P, Milach J, Lang E, Kuchenbuch S, Reggiori F, Moeller A, Ungermann C

PDB-9t0c:
Atg2-Atg18 complex from yeast
Method: single particle / : Chumpen Ramirez S, Shvarev D, Vargas Duarte P, Milach J, Lang E, Kuchenbuch S, Reggiori F, Moeller A, Ungermann C

EMDB-77071:
Cryo-EM structure of Pseudomonas aeruginosa soluble lipoprotein PA3214
Method: single particle / : Redler R, Giacometti SI, Coudray N, Bhabha G, Ekiert DC

EMDB-77072:
Cryo-EM structure of Pseudomonas aeruginosa outer-membrane lipoprotein PA3214 bound to MCE protein PA3213 C-terminal peptide (CASP target)
Method: single particle / : Giacometti SI, Coudray N, Bhabha G, Ekiert DC

EMDB-77073:
Cryo-EM structure of Pseudomonas aeruginosa outer-membrane lipoprotein PA3214 in the open conformation
Method: single particle / : Giacometti SI, Coudray N, Bhabha G, Ekiert DC

EMDB-77074:
PA3213 MCE protein in complex with PA3214 OM lipoprotein
Method: single particle / : Giacometti SI, Coudray N, Bhabha G, Ekiert DC

PDB-13hq:
Cryo-EM structure of Pseudomonas aeruginosa soluble lipoprotein PA3214
Method: single particle / : Redler R, Giacometti SI, Coudray N, Bhabha G, Ekiert DC

PDB-13hr:
Cryo-EM structure of Pseudomonas aeruginosa outer-membrane lipoprotein PA3214 bound to MCE protein PA3213 C-terminal peptide
Method: single particle / : Giacometti SI, Coudray N, Bhabha G, Ekiert DC

PDB-13hs:
Cryo-EM structure of Pseudomonas aeruginosa outer-membrane lipoprotein PA3214 in the open conformation
Method: single particle / : Giacometti SI, Coudray N, Bhabha G, Ekiert DC

EMDB-74113:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1B2
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

EMDB-74114:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1G1
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

PDB-9zen:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1B2
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

PDB-9zeo:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1G1
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

EMDB-52134:
double helical p62/SQSTM1 filament
Method: helical / : Berkamp S, Jungbluth L, Katranidis A, Mostafavi S, Sachse C

PDB-9hge:
PB1 domain of p62/SQSTM1
Method: helical / : Berkamp S, Jungbluth L, Katranidis A, Mostafavi S, Sachse C

EMDB-71704:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

PDB-9pkv:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

EMDB-50201:
Human condensin II - M18BP1 complex
Method: single particle / : Borsellini A, Vannini A

PDB-9f5w:
Human condensin II - M18BP1 complex
Method: single particle / : Borsellini A, Vannini A

EMDB-46976:
Arabinosyltransferase AftB in complex with Fab_B3
Method: single particle / : Liu Y, Mancia F

EMDB-46978:
donor substrate analog-bound AftB
Method: single particle / : Liu Y, Mancia F

EMDB-46998:
Product-Bound mannosyltransferase PimE
Method: single particle / : Liu Y

EMDB-46999:
mannosyltransferase PimE in complex with Fab_E6
Method: single particle / : Liu Y

PDB-9dlf:
Arabinosyltransferase AftB in complex with Fab_B3
Method: single particle / : Liu Y, Mancia F

PDB-9dlh:
donor substrate analog-bound AftB
Method: single particle / : Yaqi L

PDB-9dm5:
Product-Bound mannosyltransferase PimE
Method: single particle / : Liu Y

PDB-9dm7:
mannosyltransferase PimE in complex with Fab_E6
Method: single particle / : Liu Y

PDB-9mjb:
Product-Bound mannosyltransferase PimE in complex with Fab
Method: single particle / : Liu Y, Mancia F

EMDB-19790:
Restriction on Ku Inward Translocation Caps Telomere Ends
Method: single particle / : Mattarocci S, Baconnais S, Roisne-Hamelin F, Pobiega S, Alibert O, Morin V, Deshayes A, Veaute X, Ropars V, Mazon G, Busso D, Fernandez Varela P, Le Cam E, Charbonnier J, Cuniasse P, Marcand S

EMDB-19811:
Restriction on Ku Inward Translocation Caps Telomere Ends
Method: single particle / : Mattarocci S, Baconnais S, Roisne-Hamelin F, Pobiega S, Alibert O, Morin V, Deshayes A, Veaute X, Ropars V, Mazon G, Busso D, Fernandez Varela P, Le Cam E, Charbonnier J, Cuniasse P, Marcand S

PDB-8s82:
Restriction on Ku Inward Translocation Caps Telomere Ends
Method: single particle / : Mattarocci S, Baconnais S, Roisne-Hamelin F, Pobiega S, Alibert O, Morin V, Deshayes A, Veaute X, Ropars V, Mazon G, Busso D, Fernandez Varela P, Le Cam E, Charbonnier J, Cuniasse P, Marcand S

PDB-8s8p:
Restriction on Ku Inward Translocation Caps Telomere Ends
Method: single particle / : Mattarocci S, Baconnais S, Roisne-Hamelin F, Pobiega S, Alibert O, Morin V, Deshayes A, Veaute X, Ropars V, Mazon G, Busso D, Fernandez Varela P, Le Cam E, Charbonnier J, Cuniasse P, Marcand S

EMDB-48705:
Cryo-EM Structure of Human Enterovirus D68 USA/IL/14-18952
Method: single particle / : Xu L, Pintilie G, Varanese L, Carette JE, Chiu W

EMDB-48713:
Cryo-EM Structure of Human Enterovirus D68 USA/IL/14-18952 in Complex with Fc-MFSD6(L3)
Method: single particle / : Xu L, Pintilie G, Varanese L, Carette JE, Chiu W

PDB-9mwz:
Cryo-EM Structure of Human Enterovirus D68 USA/IL/14-18952
Method: single particle / : Xu L, Pintilie G, Varanese L, Carette JE, Chiu W

PDB-9mxc:
Cryo-EM Structure of Human Enterovirus D68 USA/IL/14-18952 in Complex with Fc-MFSD6(L3)
Method: single particle / : Xu L, Pintilie G, Varanese L, Carette JE, Chiu W

EMDB-50707:
Structure of the SARS-CoV-2 spike glycoprotein in complex with nanobody 7F
Method: single particle / : Debski-Antoniak O, Drulyte I, Hurdiss DL

EMDB-50708:
Structure of the SARS-CoV-2 spike glycoprotein in complex with nanobody 7F (local refinement)
Method: single particle / : Debski-Antoniak O, Drulyte I, Hurdiss DL

PDB-9fr3:
Structure of the SARS-CoV-2 spike glycoprotein in complex with nanobody 7F
Method: single particle / : Debski-Antoniak O, Hurdiss DL

PDB-9fr4:
Structure of the SARS-CoV-2 spike glycoprotein in complex with nanobody 7F (local refinement)
Method: single particle / : Debski-Antoniak O, Hurdiss DL

EMDB-46946:
TRIF TIR Filament Cryo-EM Structure
Method: helical / : Manik MK, Xiao L, Wu H

EMDB-46977:
CryoEM structure of the TIR domain from human TRAM
Method: helical / : Hedger A, Pospich S, Pan M, Gu W, Ve T, Raunser S, Landsberg M, Nanson JD, Kobe B

PDB-9dk8:
TRIF TIR Filament Cryo-EM Structure
Method: helical / : Manik MK, Xiao L, Wu H

PDB-9dlg:
CryoEM structure of the TIR domain from human TRAM
Method: helical / : Hedger A, Pospich S, Pan M, Gu W, Ve T, Raunser S, Landsberg M, Nanson JD, Kobe B

EMDB-19627:
Cryo-EM structure of CAK modified by covalent inhibitor SY-1365
Method: single particle / : Feng J, Koh AF, Kotecha A, Greber BJ

EMDB-19628:
Cryo-EM structure of CAK in complex with SY-5609
Method: single particle / : Feng J, Cronin NB, Marineau JJ, Greber BJ

PDB-8s0r:
Cryo-EM structure of CAK modified by covalent inhibitor SY-1365
Method: single particle / : Feng J, Koh AF, Kotecha A, Greber BJ

PDB-8s0t:
Cryo-EM structure of CAK in complex with SY-5609
Method: single particle / : Feng J, Cronin NB, Marineau JJ, Greber BJ

EMDB-19057:
human TRPM4 in SMA apo
Method: single particle / : Ekundayo B, Prakash A, Christian G, Anne FH, Sabrina G, Mey B, Daniela R, Martin L, Jean SR, Henning S, Hugues A, Dongchun N

EMDB-19061:
human TRPM4 in SMA IBA
Method: single particle / : Ekundayo B, Prakash A, Christian G, Anne FH, Sabrina G, Mey B, Daniela R, Martin L, Jean SR, Henning S, Hugues A, Dongchun N

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more