[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,059 items for (author: ren & gr)

EMDB-70083:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70084:
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70086:
Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3v:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3w:
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3y:
Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

PDB-9r90:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

EMDB-52634:
Single particle cryo electron microscopy of a Fab fragment bound to recombinant human CD40 ligand
Method: single particle / : Kristoffersen EL, Schinkel T, Andersen ES

PDB-9i5n:
Single particle cryo electron microscopy of a Fab fragment bound to recombinant human CD40 ligand
Method: single particle / : Kristoffersen EL, Schinkel T, Andersen ES

EMDB-56238:
In situ cryo-ET subtomogram averaged map of Flotillin complex
Method: subtomogram averaging / : Li D, Lizarrondo J, Wilfling F

EMDB-56295:
In situ cryo-ET tomogram of a lysosomal structure in untreated HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56296:
In situ cryo-ET tomogram of lysosome damaged by LLOMe (0.5mM, 60min) in HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56297:
In situ cryo-ET of lysosome damaged by LLOMe (0.5mM, 60min) encapsulated in an autophagosome in HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56298:
In situ cryo-ET tomogram of lysosomes in BAPTA AM pre-treated (50uM, 30min) and LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56300:
In situ cryo-ET tomogram of lysosomes in LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56327:
In situ cryo-ET tomogram of lysosomal structure in untreated rat hippocampal neurons
Method: electron tomography / : Li D, Schwarz A, Wilfling F

EMDB-56329:
In situ cryo-ET tomogram of lysosomes in E64d pre-treated (20uM, 30min) and LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56330:
In situ cryo-ET tomogram of lysosomal structure in LLOMe-treated (0.5mM, 1h) rat hippocampal neuron.
Method: electron tomography / : Li D, Schwarz A, Wilfling F

EMDB-55368:
Noc2-TAP pre-60S particle - state 2
Method: single particle / : Grundmann L, Gerhalter M, Prattes M, Grishkovskaya I, Kotisch H, Haselbach D, Bergler H

EMDB-70676:
Cryo-EM Structure of the Escherichia phage HK446 Rip1 in complex with the Enterobacteria phage T6 small terminase
Method: single particle / : Patel PH, Maxwell KL, Norris MJ

PDB-9oox:
Cryo-EM Structure of the Escherichia phage HK446 Rip1 in complex with the Enterobacteria phage T6 small terminase
Method: single particle / : Patel PH, Maxwell KL, Norris MJ

EMDB-53246:
Consensus refinement: Ternary complex of the human 20S proteasome in complex with Importin-9 and two homo dimers of Akirin-2. Focussed refinement
Method: single particle / : Brunner HL, Grundmann L, Haslelbach D

EMDB-53248:
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on Importin-9 and Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

EMDB-53264:
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on the alpha subunits, Ipo-9 and Ak2
Method: single particle / : Brunner HL, Grundmann L, David H

EMDB-53265:
Composite map: Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

EMDB-53266:
Binary complex of human Importin-9 with one homodimer of Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qno:
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on Importin-9 and Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qon:
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on the alpha subunits, Ipo-9 and Ak2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qoo:
Composite model: Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qop:
Binary complex of human Importin-9 with one homodimer of Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

EMDB-72358:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (consensus structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-72359:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (head structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-72361:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (body structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-72362:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (substrate structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

PDB-9xzj:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (consensus structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

PDB-9xzk:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (head structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

PDB-9xzl:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (body structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

PDB-9xzm:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (substrate structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-53201:
Yeast pre-60S Domain II intermediate
Method: single particle / : Grundmann L, Gerhalter M, Prattes M, Grishkovskaya I, Kotisch H, Haselbach D, Bergler H

EMDB-55356:
Noc2-TAP pre-60S particle - state 1
Method: single particle / : Grundmann L, Gerhalter M, Prattes M, Grishkovskaya I, Kotisch H, Haselbach D, Bergler H

EMDB-55840:
Noc2-TAP pre-60S particle - state 3
Method: single particle / : Gerhalter M, Prattes M, Grundmann L, Grishkovskaya I, Kotisch H, Haselbach D, Bergler H

EMDB-55843:
Noc2-TAP 90S particle - state A1
Method: single particle / : Gerhalter M, Prattes M, Grundmann L, Grishkovskaya I, Kotisch H, Haselbach D, Bergler H

EMDB-55860:
Noc2-TAP 90S particle - state A2
Method: single particle / : Gerhalter M, Prattes M, Grundmann L, Grishkovskaya I, Kotisch H, Haselbach D, Bergler H

EMDB-55874:
Noc2-TAP 90S particle - state A3
Method: single particle / : Gerhalter M, Prattes M, Grundmann L, Grishkovskaya I, Kotisch H, Haselbach D, Bergler H

PDB-9qjc:
Yeast pre-60S Domain II intermediate
Method: single particle / : Grundmann L, Gerhalter M, Prattes M, Grishkovskaya I, Kotisch H, Haselbach D, Bergler H

EMDB-54927:
Structure of the bacterial archaellum from L. aerophila
Method: helical / : Sivabalasarma S, Taib N, Mollat CL, Joest M, Steimle S, Gribaldo S, Albers SV

EMDB-54928:
Supercoiling bacterial archaellum filament from L. aerophila
Method: single particle / : Sivabalasarma S, Taib N, Mollat CL, Joest M, Steimle S, Gribaldo S, Albers SV

PDB-9sie:
Structure of the bacterial archaellum from L. aerophila
Method: helical / : Sivabalasarma S, Taib N, Mollat CL, Joest M, Steimle S, Gribaldo S, Albers SV

PDB-9sii:
Supercoiling bacterial archaellum filament from L. aerophila
Method: single particle / : Sivabalasarma S, Taib N, Mollat CL, Joest M, Steimle S, Gribaldo S, Albers SV

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more