[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 46 items for (author: poon & s)

EMDB-36488:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Composite map)
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

EMDB-37212:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Receptor original map)
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

EMDB-37214:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Ligand/CCL7 focused map)
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

PDB-8jps:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Composite map)
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

EMDB-16904:
Structure of the MlaCD complex (1:6 stoichiometry)
Method: single particle / : Wotherspoon P, Bui S, Sridhar P, Bergeron JRC, Knowles TJ

EMDB-16913:
Structure of the MlaCD complex (2:6 stoichiometry)
Method: single particle / : Wotherspoon P, Bui S, Sridhar P, Bergeron JRC, Knowles TJ

PDB-8oj4:
Structure of the MlaCD complex (1:6 stoichiometry)
Method: single particle / : Wotherspoon P, Bui S, Sridhar P, Bergeron JRC, Knowles TJ

PDB-8ojg:
Structure of the MlaCD complex (2:6 stoichiometry)
Method: single particle / : Wotherspoon P, Bui S, Sridhar P, Bergeron JRC, Knowles TJ

EMDB-26583:
Cryo-EM structure of Antibody 12-16 in complex with prefusion SARS-CoV-2 Spike glycoprotein
Method: single particle / : Casner RG, Shapiro L

PDB-7ukl:
Cryo-EM structure of Antibody 12-16 in complex with prefusion SARS-CoV-2 Spike glycoprotein
Method: single particle / : Casner RG, Shapiro L

EMDB-28067:
CryoEM reconstruction of tri-specific 298-52-80 Multabody (no symmetry applied)
Method: single particle / : Kucharska I, Cui H, Rubinstein JL, Julien JP

EMDB-28068:
CryoEM reconstruction of the tri-specific 298-52-80 Multabody (octahedral symmetry applied)
Method: single particle / : Kucharska I, Cui H, Rubinstein JL, Julien JP

EMDB-32497:
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (focused refinement on Fab-RBD)
Method: single particle / : Zeng JW

EMDB-32498:
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (3U)
Method: single particle / : Zeng JW, Ge JW

EMDB-32499:
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (2u1d)
Method: single particle / : Zeng JW, Wang XW

PDB-7wh8:
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (focused refinement on Fab-RBD)
Method: single particle / : Zeng JW

PDB-7whb:
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (3U)
Method: single particle / : Zeng JW, Ge JW, Wang XQ

PDB-7whd:
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (2u1d)
Method: single particle / : Zeng JW, Wang XW, Ge JW, Wang ZY

EMDB-28658:
Cryo-EM structure of S. aureus BlaR1 with C2 symmetry
Method: single particle / : Worrall LJ, Alexander JAN, Vuckovic M, Strynadka NCJ

EMDB-28659:
Cryo-EM structure of S. aureus BlaR1 with C1 symmetry
Method: single particle / : Worrall LJ, Alexander JAN, Vuckovic M, Strynadka NCJ

EMDB-28660:
Cryo-EM structure of S. aureus BlaR1 TM and zinc metalloprotease domain
Method: single particle / : Worrall LJ, Alexander JAN, Vuckovic M, Strynadka NCJ

EMDB-28661:
Cryo-EM structure of S. aureus BlaR1 F284A mutant
Method: single particle / : Alexander JAN, Hu J, Worrall LJ, Strynadka NCJ

EMDB-28662:
Cryo-EM structure of S. aureus BlaR1 F284A mutant in complex with ampicillin
Method: single particle / : Alexander JAN, Hu J, Worrall LJ, Strynadka NCJ

PDB-8exp:
Cryo-EM structure of S. aureus BlaR1 with C2 symmetry
Method: single particle / : Worrall LJ, Alexander JAN, Vuckovic M, Strynadka NCJ

PDB-8exq:
Cryo-EM structure of S. aureus BlaR1 with C1 symmetry
Method: single particle / : Worrall LJ, Alexander JAN, Vuckovic M, Strynadka NCJ

PDB-8exr:
Cryo-EM structure of S. aureus BlaR1 TM and zinc metalloprotease domain
Method: single particle / : Worrall LJ, Alexander JAN, Vuckovic M, Strynadka NCJ

PDB-8exs:
Cryo-EM structure of S. aureus BlaR1 F284A mutant
Method: single particle / : Alexander JAN, Hu J, Worrall LJ, Strynadka NCJ

PDB-8ext:
Cryo-EM structure of S. aureus BlaR1 F284A mutant in complex with ampicillin
Method: single particle / : Alexander JAN, Hu J, Worrall LJ, Strynadka NCJ

EMDB-33191:
The structure of ZCB11 Fab against SARS-CoV-2 Omicron Spike
Method: single particle / : Hang L, Shangyu D

EMDB-33194:
The Cryo-EM structure of SARS-CoV-2 Omicron 2-RBD up spike protein complexed with ZCB11 fab
Method: single particle / : Hang L, Dang S

EMDB-33195:
The Cryo-EM structure of SARS-CoV-2 Omicron 3-RBD up spike protein complexed with ZCB11 fab
Method: single particle / : Hang L, Dang S

PDB-7xh8:
The structure of ZCB11 Fab against SARS-CoV-2 Omicron Spike
Method: single particle / : Hang L, Dang S

EMDB-25146:
Broadly Neutralizing Antibody 10-40 in complex with prefusion SARS-CoV-2 B.1.351 Spike glycoprotein
Method: single particle / : Casner RG, Reddem ER, Shapiro L

EMDB-25166:
Antibody 10-28 in complex with prefusion SARS-CoV-2 B.1.351 Spike glycoprotein
Method: single particle / : Casner RG, Shapiro L

EMDB-25167:
Antibody 11-11 in complex with prefusion SARS-CoV-2 B.1.351 Spike glycoprotein
Method: single particle / : Casner RG, Shapiro L

EMDB-9029:
Hemagglutinin trimeric ectodomain (B/Massachusetts/02/2012) in complex with Fab from IgG CR9114 and single-domain antibody SD84
Method: single particle / : Pallesen J, Nieusma T, Hoffman RMB, Ward AB

EMDB-2143:
Highly Conserved Protective Epitopes on Influenza B Viruses
Method: single particle / : Khayat R, Lee JH, Dreyfus C, Laursen NS, Wilson IA, Ward AB

EMDB-2144:
Highly Conserved Protective Epitopes on Influenza B Viruses
Method: single particle / : Khayat R, Lee JH, Dreyfus C, Laursen NS, Wilson IA, Ward AB

EMDB-2145:
Electron microscopy of Influenza hemagglutinin (Malaysia/2506/2004) in complex with neutralizing antibody (Fab CR8071
Method: single particle / : Khayat R, Lee JH, Dreyfus C, Laursen NS, Wilson IA, Ward AB

EMDB-2146:
Electron microscopy of Influenza hemagglutinin (Malaysia/2506/2004) in complex with neutralizing antibody (Fab CR9114
Method: single particle / : Khayat R, Lee JH, Ekiert DC, Dreyfus C, Wilson IA, Ward AB

EMDB-2147:
Electron microscopy of Influenza hemagglutinin (South Carolina/1/1918 (H1N1)) in complex with neutralizing antibody (Fab CR9114)
Method: single particle / : Khayat R, Meltagen Z, Ekiert DC, Dreyfus C, Wilson IA, Ward AB

EMDB-2148:
Electron microscopy of Influenza hemagglutinin (Hong Kong/1/1968 (H3N2)) in complex with neutralizing antibody (Fab CR9114)
Method: single particle / : Khayat R, Meltagen Z, Ekiert DC, Dreyfus C, Wilson IA, Ward AB

EMDB-2149:
Electron microscopy of Influenza hemagglutinin (Wisconsin/1/1966 (H9N2)) in complex with neutralizing antibody (Fab CR9114)
Method: single particle / : Khayat R, Meltagen Z, Ekiert DC, Dreyfus C, Wilson IA, Ward AB

EMDB-2150:
Electron microscopy of Influenza hemagglutinin (Netherlands/219/2003 (H7N7)) in complex with neutralizing antibody (Fab CR9114)
Method: single particle / : Khayat R, Meltagen Z, Ekiert DC, Dreyfus C, Wilson IA, Ward AB

EMDB-5263:
Quaternary structures of HIV Env immunogen exhibit conformational vicissitudes and interface diminution elicited by ligand binding
Method: single particle / : Moscoso CG, Sun Y, Poon S, Xing L, Kan E, Martin L, Green DJ, Lin F, Vahlne A, Barnett SW, Srivastava IK, Cheng RH

EMDB-5264:
Quaternary structures of HIV Env immunogen exhibit conformational vicissitudes and interface diminution elicited by ligand binding
Method: single particle / : Moscoso CG, Sun Y, Poon S, Xing L, Kan E, Martin L, Green DJ, Lin F, Vahlne A, Barnett SW, Srivastava IK, Cheng RH

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more