[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,003 items for (author: pan & q)

EMDB-39077:
pP1192R-DNA-m-AMSA complex Overall-2
Method: single particle / : Sun JQ, liu RL

EMDB-39078:
pP1192R-DNA-m-AMSA complex Overall-1
Method: single particle / : Sun JQ, liu RL

EMDB-39245:
pP1192R-DNA-m-AMSA complex DNA binding/cleavage domain
Method: single particle / : Sun JQ, Liu RL

EMDB-39249:
pP1192R-apo Closed state
Method: single particle / : Sun JQ, Liu RL

EMDB-39250:
pP1192R-apo open state
Method: single particle / : Sun JQ, Liu RL

PDB-8yge:
pP1192R-DNA-m-AMSA complex DNA binding/cleavage domain
Method: single particle / : Sun JQ, Liu RL

PDB-8ygg:
pP1192R-apo Closed state
Method: single particle / : Sun JQ, Liu RL

PDB-8ygh:
pP1192R-apo open state
Method: single particle / : Sun JQ, Liu RL

EMDB-39898:
CryoEM structure of non-structural protein 1 dimer from Yellow Fever Virus
Method: single particle / : Pan Q, Chen Q, Hu HL

EMDB-39899:
CryoEM structure of non-structural protein 1 tetramer from Yellow Fever Virus
Method: single particle / : Pan Q, Chen Q, Hu HL

PDB-8zb9:
CryoEM structure of non-structural protein 1 dimer from Yellow Fever Virus
Method: single particle / : Pan Q, Chen Q, Hu HL

PDB-8zba:
CryoEM structure of non-structural protein 1 tetramer from Yellow Fever Virus
Method: single particle / : Pan Q, Chen Q, Hu HL

EMDB-38914:
BA.2.86 S-trimer in complex with Nab XG2v046
Method: single particle / : Zhu Q, Liu P

PDB-8y4a:
BA.2.86 S-trimer in complex with Nab XG2v046
Method: single particle / : Zhu Q, Liu P

EMDB-38915:
BA.2.86 S-trimer in complex with Nab XGv280
Method: single particle / : Zhu Q, Liu P

PDB-8y4c:
BA.2.86 S-trimer in complex with Nab XGv280
Method: single particle / : Zhu Q, Liu P

EMDB-39460:
Structure of HKU1A RBD with TMPRSS2
Method: single particle / : Gao X, Cui S, Ding W, Shang K, Zhu H, Zhu K

EMDB-39502:
Structure of HKU1B RBD with TMPRSS2
Method: single particle / : Gao X, Cui S, Ding W, Zhu K, Shang K, Zhu H

PDB-8yoy:
Structure of HKU1A RBD with TMPRSS2
Method: single particle / : Gao X, Cui S, Ding W, Shang K, Zhu H, Zhu K

PDB-8yqq:
Structure of HKU1B RBD with TMPRSS2
Method: single particle / : Gao X, Cui S, Ding W, Zhu K, Shang K, Zhu H

EMDB-38845:
Icosahedrally averaged cryo-EM reconstruction of PhiKZ capsid before applying the "block-based" reconstruction method
Method: single particle / : Yang Y, Shao Q, Guo M, Han L, Zhao X, Wang A, Li X, Wang B, Pan J, Chen Z, Fokine A, Sun L, Fang Q

EMDB-38846:
Block 1 of PhiKZ capsid
Method: single particle / : Yang Y, Shao Q, Guo M, Han L, Zhao X, Wang A, Li X, Wang B, Pan J, Chen Z, Fokine A, Sun L, Fang Q

EMDB-38848:
Block 2 of PhiKZ capsid
Method: single particle / : Yang Y, Shao Q, Guo M, Han L, Zhao X, Wang A, Li X, Wang B, Pan J, Chen Z, Fokine A, Sun L, Fang Q

EMDB-39002:
Composite cryo-EM map of PhiKZ capsid after applying the "block-based" reconstruction method
Method: single particle / : Yang Y, Shao Q, Guo M, Han L, Zhao X, Wang A, Li X, Wang B, Pan J, Chen Z, Fokine A, Sun L, Fang Q

PDB-8y6v:
Near-atomic structure of icosahedrally averaged jumbo bacteriophage PhiKZ capsid
Method: single particle / : Yang Y, Shao Q, Guo M, Han L, Zhao X, Wang A, Li X, Wang B, Pan J, Chen Z, Fokine A, Sun L, Fang Q

EMDB-38099:
Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by intein-based E2-Ub-NCP conjugation strategy
Method: single particle / : Ai HS, Tong ZB, Deng ZH, Pan M, Liu L

EMDB-38100:
Cryo-EM structures of RNF168/UbcH5c-Ub/nucleosomes complex determined by activity-based chemical trapping strategy
Method: single particle / : Ai HS, Tong ZB, Deng ZH, Pan M, Liu L

EMDB-38101:
Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by activity-based chemical trapping strategy (adjacent H2AK13/15 dual-monoubiquitination)
Method: single particle / : Ai HS, Tong ZB, Deng ZH, Pan M, Liu L

EMDB-38102:
Cryo-EM map of RNF168/UbcH5c-Ub/nucleosome determined by E2-Ub-NCP conjugation strategy
Method: single particle / : Ai H, Zebin T, Deng Z, Pan M, Liu L

EMDB-44482:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

EMDB-44484:
Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs
Method: single particle / : Gorman J, Kwong PD

EMDB-44491:
Cryo-EM structure of the HIV-1 WITO IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

PDB-9ber:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

PDB-9bew:
Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs
Method: single particle / : Gorman J, Kwong PD

PDB-9bf6:
Cryo-EM structure of the HIV-1 WITO IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

EMDB-37546:
Spike Trimer of BA.2.86 in complex with one hACE2
Method: single particle / : Yue C, Liu P

EMDB-37548:
Spike Trimer of BA.2.86 in complex with two hACE2s
Method: single particle / : Yue C, Liu P

EMDB-37549:
Spike Trimer of BA.2.86 with three RBDs down
Method: single particle / : Yue C, Liu P

EMDB-37550:
Spike Trimer of BA.2.86 with single RBD up
Method: single particle / : Yue C, Liu P

EMDB-38049:
SARS-CoV-2 JN.1 Spike
Method: single particle / : Yue C, Liu P

EMDB-38072:
SARS-CoV-2 BA.2.75 Spike with K356T mutation (3 RBD down)
Method: single particle / : Yue C, Liu P

EMDB-38073:
SARS-CoV-2 BA.2.75 Spike with K356T mutation (1 RBD up)
Method: single particle / : Yue C, Liu P

EMDB-38681:
BA.2.86 Spike Trimer in complex with heparan sulfate
Method: single particle / : Yue C, Liu P

EMDB-38682:
JN.1 Spike Trimer in complex with heparan sulfate
Method: single particle / : Yue C, Liu P

EMDB-38683:
XBB.1.5 Spike Trimer in complex with heparan sulfate
Method: single particle / : Yue C, Liu P, Mao X

EMDB-38684:
BA.2.86-T356K Spike Trimer in complex with heparan sulfate (Local refinement)
Method: single particle / : Yue C, Liu P

PDB-8whs:
Spike Trimer of BA.2.86 in complex with one hACE2
Method: single particle / : Yue C, Liu P

PDB-8whu:
Spike Trimer of BA.2.86 in complex with two hACE2s
Method: single particle / : Yue C, Liu P

PDB-8whv:
Spike Trimer of BA.2.86 with three RBDs down
Method: single particle / : Yue C, Liu P

PDB-8whw:
Spike Trimer of BA.2.86 with single RBD up
Method: single particle / : Yue C, Liu P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more