[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 31 items for (author: pain & m)

EMDB-77057:
IST1 bound to PI(3,5)P2 containing membrane
Method: helical / : Moss III FR, Talledge N, Alian A, McCullough J, Frost A, Sundquist WI

EMDB-77058:
IST1 bound to PI(4,5)P2 containing membrane
Method: helical / : Alian A, Moss III FR, Talledge N, McCullough J, Frost A, Sundquist WI

EMDB-77060:
CHMP1A bound to PI(4,5)P2 containing membrane
Method: helical / : Alian A, Talledge N, Moss III FR, McCullough J, Frost A, Sundquist WI

PDB-13gh:
IST1 bound to PI(3,5)P2 containing membrane
Method: helical / : Moss III FR, Talledge N, Alian A, McCullough J, Frost A, Sundquist WI

PDB-13gj:
IST1 bound to PI(4,5)P2 containing membrane
Method: helical / : Alian A, Moss III FR, Talledge N, McCullough J, Frost A, Sundquist WI

PDB-13gm:
CHMP1A bound to PI(4,5)P2 containing membrane
Method: helical / : Alian A, Talledge N, Moss III FR, McCullough J, Frost A, Sundquist WI

EMDB-75818:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 1E11
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Kwong PD, Zhou T

EMDB-75894:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 5H03
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Shapiro L, Kwong PD, Zhou T

PDB-11lt:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 1E11
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Kwong PD, Zhou T

PDB-11ov:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 5H03
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Shapiro L, Kwong PD, Zhou T

EMDB-42440:
Cryo-EM structure of human full-length RAD52 in the presence of fork DNA
Method: single particle / : Razzaghi M, Schnicker NJ, Spies M

EMDB-42065:
Cryo-EM structure of human full-length RAD52 in the presence of fork DNA
Method: single particle / : Razzaghi M, Schnicker NJ, Spies M

EMDB-42066:
Cryo-EM density map of a double-ring of human RAD52 in the presence of fork DNA
Method: single particle / : Razzaghi M, Schnicker NJ, Spies M

EMDB-42069:
Cryo-EM density map of a double-ring of human RAD52 in the presence of fork DNA
Method: single particle / : Razzaghi M, Schnicker NJ, Spies M

EMDB-41357:
Cryo-EM structure of human full-length RAD52
Method: single particle / : Schnicker NJ, Razzaghi M, Spies M

PDB-8tkq:
Cryo-EM structure of human full-length RAD52
Method: single particle / : Schnicker NJ, Razzaghi M, Spies M

EMDB-19005:
structure of the GLMP/MFSD1 complex
Method: single particle / : Jungnickel KEJ, Loew C

EMDB-19006:
Lysosomal peptide transporter
Method: single particle / : Jungnickel KEJ, Loew C

PDB-8r8q:
Lysosomal peptide transporter
Method: single particle / : Jungnickel KEJ, Loew C

EMDB-40180:
MsbA bound to cerastecin C
Method: single particle / : Chen Y, Klein D

PDB-8gk7:
MsbA bound to cerastecin C
Method: single particle / : Chen Y, Klein D

EMDB-8096:
The Architecture of the Cytoplasmic Region of Type III Secretion Systems
Method: subtomogram averaging / : Makino F, Shen D, Kajimura N, Kawamoto A, Pissaridou P, Oswin H, Pain M, Murillo I, Namba K, Blocker AJ

EMDB-8121:
The Architecture of the Cytoplasmic Region of Type III Secretion Systems
Method: subtomogram averaging / : Makino F, Blocker A

EMDB-8122:
The Architecture of the Cytoplasmic Region of Type III Secretion Systems
Method: subtomogram averaging / : Makino F, Blocker A

PDB-4d3e:
Tetramer of IpaD, modified from 2J0O, fitted into negative stain electron microscopy reconstruction of the wild type tip complex from the type III secretion system of Shigella flexneri
Method: single particle / : Cheung M, Shen DK, Makino F, Kato T, Roehrich D, Martinez-Argudo I, Walker ML, Murillo I, Liu X, Pain M, Brown J, Frazer G, Mantell J, Mina P, Todd T, Sessions RB, Namba K, Blocker AJ

EMDB-2801:
Negative stain electron microscopy reconstruction of the wild type tip complex from the type III secretion system of Shigella flexneri
Method: single particle / : Cheung M, Shen D, Makino F, Kato T, Roehrich D, Martinez-Argudo I, Walker ML, Murillo I, Liu X, Pain M, Brown J, Frazer G, Mantell J, Mina P, Todd T, Sessions RB, Namba K, Blocker AJ

EMDB-2802:
Negative stain electron microscopy reconstruction of the tip complex from the type III secretion system of Shigella flexneri lacking IpaB
Method: single particle / : Cheung M, Shen D, Makino F, Kato T, Roehrich D, Martinez-Argudo I, Walker ML, Murillo I, Liu X, Pain M, Brown J, Frazer G, Mantell J, Mina P, Todd T, Sessions RB, Namba K, Blocker AJ

EMDB-2803:
Negative stain electron microscopy reconstruction of the tip complex and needle from the type III secretion system of Shigella flexneri with MxiH mutation P44A
Method: single particle / : Cheung M, Shen D, Makino F, Kato T, Roehrich D, Martinez-Argudo I, Walker ML, Murillo I, Liu X, Pain M, Brown J, Frazer G, Mantell J, Mina P, Todd T, Sessions RB, Namba K, Blocker AJ

EMDB-2805:
Refined negative stain electron microscopy reconstruction of the tip complex from the type III secretion system of Shigella flexneri with MxiH mutation Q51A
Method: single particle / : Cheung M, Shen D, Makino F, Kato T, Roehrich D, Martinez-Argudo I, Walker ML, Murillo I, Liu X, Pain M, Brown J, Frazer G, Mantell J, Mina P, Todd T, Sessions RB, Namba K, Blocker AJ

EMDB-2806:
Negative stain electron microscopy reconstruction of the tip complex from the type III secretion system of Shigella flexneri with MxiH mutations P44A+Q51A
Method: single particle / : Cheung M, Shen D, Makino F, Kato T, Roehrich D, Martinez-Argudo I, Walker ML, Murillo I, Liu X, Pain M, Brown J, Frazer G, Mantell J, Mina P, Todd T, Sessions RB, Namba K, Blocker AJ

EMDB-2804:
Negative stain electron microscopy reconstruction of the tip complex from the type III secretion system of Shigella flexneri with MxiH mutation Q51A
Method: single particle / : Cheung M, Shen D, Makino F, Kato T, Roehrich D, Martinez-Argudo I, Walker ML, Murillo I, Liu X, Pain M, Brown J, Frazer G, Mantell J, Mina P, Todd T, Sessions RB, Namba K, Blocker AJ

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more