[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 57 items for (author: padi & s)

EMDB-45243:
PP2A:B55-p107 substrate complex
Method: single particle / : Page R, Peti W, Padi S, Godek RJ

EMDB-45292:
PP2A:B55-Eya3 substrate complex
Method: single particle / : Page R, Peti W, Padi S, Godek RJ

PDB-9c6b:
PP2A:B55-p107 substrate complex
Method: single particle / : Page R, Peti W, Padi S, Godek RJ

PDB-9c7t:
PP2A:B55-Eya3 substrate complex
Method: single particle / : Page R, Peti W, Padi S, Godek RJ

EMDB-42922:
Cellular CHMP1B/IST1 filaments - ClassIa
Method: helical / : Talledge N, Laughlin TG, Alian A, McCullough J

EMDB-42923:
Cellular CHMP1B/IST1 filaments - ClassIb
Method: helical / : Talledge N, Laughlin TG, Alian A, McCullough J

EMDB-42925:
Cellular CHMP1B/IST1 filament - Class Ic
Method: helical / : Talledge N, Laughlin TG, Alian A, McCullough J

EMDB-42926:
Cellular CHMP1B/IST1 filament - Class Id
Method: helical / : Talledge N, Laughlin TG, Alian A, McCullough J

EMDB-42927:
Cellular CHMP1B/IST1 filament - Class II
Method: helical / : Talledge N, Laughlin TG, Alian A, McCullough J

EMDB-42928:
Cellular CHMP1B/IST1 filament - Class III
Method: helical / : Talledge N, Laughlin TG, Alian A, McCullough J

EMDB-42929:
Cellular CHMP1B/IST1 filament - Class IV
Method: helical / : Talledge N, Laughlin TG, Alian A, McCullough J

EMDB-42930:
CHMP1B/IST1 ssRNA bound copolymer
Method: helical / : Talledge N, Laughlin TG, Alian A

EMDB-42931:
CryoEM of ssDNA bound CHMP1B/IST1 copolymer assembly
Method: helical / : Talledge N, Laughlin TG, Alian A

EMDB-42932:
CHMP1B/IST1 dsDNA bound copolymer
Method: helical / : Talledge N, Laughlin TG, Alian A

EMDB-42933:
Focused classification of dsDNA nucleic acid density from in vitro CHMP1B/IST1 copolymer filaments - Class1
Method: single particle / : Talledge N, Laughlin TG, Alian A, McCullough J

EMDB-42934:
Focused classification of dsDNA nucleic acid density from in vitro CHMP1B/IST1 copolymer filaments - Class2
Method: single particle / : Talledge N, Laughlin TG, Alian A, McCullough J

EMDB-42935:
Focused classification of dsDNA nucleic acid density from in vitro CHMP1B/IST1 copolymer filaments - Class4
Method: single particle / : Talledge N, Laughlin TG, Alian A, McCullough J

EMDB-42936:
Focused classification of dsDNA nucleic acid density from in vitro CHMP1B/IST1 copolymer filaments - Class5
Method: single particle / : Talledge N, Laughlin TG, Alian A, McCullough J

EMDB-42937:
Focused classification of dsDNA nucleic acid density from in vitro CHMP1B/IST1 copolymer filaments - Class9
Method: single particle / : Talledge N, Laughlin TG, Alian A, McCullough J

EMDB-43929:
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Method: single particle / : Mattingly JM, Nguyen HA, Dunham CM

EMDB-43930:
70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)
Method: single particle / : Mattingly JM, Nguyen HA, Dunham CM

EMDB-45569:
70S initiation complex (tRNA-fMet M1 + UUG start codon)
Method: single particle / : Mattingly JM, Nguyen HA, Dunham CM

EMDB-45572:
70S initiation complex (tRNA-fMet M1 + GUG start codon)
Method: single particle / : Mattingly JM, Nguyen HA, Dunham CM

EMDB-45573:
70S initiation complex (tRNA-fMet M1 + AUG start codon)
Method: single particle / : Mattingly JM, Nguyen HA, Dunham CM

PDB-9ax7:
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Method: single particle / : Mattingly JM, Nguyen HA, Dunham CM

PDB-9ax8:
70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)
Method: single particle / : Mattingly JM, Nguyen HA, Dunham CM

PDB-9cg5:
70S initiation complex (tRNA-fMet M1 + UUG start codon)
Method: single particle / : Mattingly JM, Nguyen HA, Dunham CM

PDB-9cg6:
70S initiation complex (tRNA-fMet M1 + GUG start codon)
Method: single particle / : Mattingly JM, Nguyen HA, Dunham CM

PDB-9cg7:
70S initiation complex (tRNA-fMet M1 + AUG start codon)
Method: single particle / : Mattingly JM, Nguyen HA, Dunham CM

EMDB-38453:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-38454:
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8xlm:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8xln:
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37648:
SARS-CoV-2 EG.5.1 spike glycoprotein (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37650:
SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37651:
SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8wmd:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8wmf:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-41667:
Cryo-EM structure of the PP2A:B55-FAM122A complex, B55 body
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

EMDB-41668:
Cryo-EM structure of the PP2A:B55-FAM122A complex, PP2Ac body
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

PDB-8twe:
Cryo-EM structure of the PP2A:B55-FAM122A complex, B55 body
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

PDB-8twi:
Cryo-EM structure of the PP2A:B55-FAM122A complex, PP2Ac body
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

EMDB-40644:
Cryo-EM structure of the PP2A:B55-FAM122A complex
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

EMDB-41604:
Cryo-EM structure of the PP2A:B55-ARPP19 complex
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

PDB-8so0:
Cryo-EM structure of the PP2A:B55-FAM122A complex
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

PDB-8ttb:
Cryo-EM structure of the PP2A:B55-ARPP19 complex
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

EMDB-13739:
Tomogram of a TauRD-YFP aggregate in a TauRD-YFP expressing Hek293T cell
Method: electron tomography / : Guo Q, Saha I, Fernandez-Busnadiego R, Hartl FU

EMDB-13740:
Tomogram of a TauRD-YFP aggregate in a TauRD-YFP expressing primary mouse neuron
Method: electron tomography / : Trinkaus VA, Saha I, Fernandez-Busnadiego R, Hartl FU

PDB-7ko8:
Cryo-EM structure of the mature and infective Mayaro virus
Method: single particle / : Riberio-Filho HV, Coimbra LD, Cassago A, Rocha RPF, Padilha ACM, Schatz M, van Heel MG, Portugal RV, Trivella DBB, de Oliveira PSL, Marques RE

EMDB-22961:
Cryo-EM structure of the mature and infective Mayaro virus
Method: single particle / : Ribeiro Filho H, Coimbra LD, Cassago A, Rocha RFP, Padilha AC, Trivella DBB, Schatz M, Oliveira PSL, Portugal RV, Marques RE, van Heel M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more