[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 8,107 items for (author: ni & q)

EMDB-51861:
dCas9 bound to on-target EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

EMDB-51862:
dCas9 bound to off-target 1 EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

EMDB-51863:
dCas9 bound to off-target 2 EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

EMDB-51864:
wtCas9 bound to off-target 1 EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

PDB-9h4j:
dCas9 bound to on-target EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

PDB-9h4k:
dCas9 bound to off-target 1 EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

PDB-9h4l:
dCas9 bound to off-target 2 EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

PDB-9h4m:
wtCas9 bound to off-target 1 EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

EMDB-54561:
RVFV Gn-Ferritin Nanoparticle
Method: single particle / : Rodrigues MQ

EMDB-64755:
Nav1.5 in complex with quinidine-azo
Method: single particle / : Huang Z, Li Z, Liu S

PDB-9v3s:
Nav1.5 in complex with quinidine-azo
Method: single particle / : Huang Z, Li Z, Liu S

EMDB-63691:
At S3 trimer
Method: single particle / : Zhang SS

EMDB-63692:
At S1+2S3 trimer
Method: single particle / : Zhang SS

EMDB-63695:
At 2S1+S3-tRNA trimer
Method: single particle / : Zhang SS

PDB-9m7r:
At S3 trimer
Method: single particle / : Zhang SS

PDB-9m7s:
At S1+2S3 trimer
Method: single particle / : Zhang SS

PDB-9m7w:
At 2S1+S3-tRNA trimer
Method: single particle / : Zhang SS

EMDB-75112:
SK3D-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75120:
OX1-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75121:
SK5A-Matured apo state in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75122:
SK5B-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75123:
SK3D-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75127:
SK5G-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75128:
OX1-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75129:
SK5A-Matured glycine/glutamate in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75134:
SK5G-Germline
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75136:
SK5A-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75138:
SK5B-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10en:
SK3D-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10ev:
OX1-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10ex:
SK5A-Matured apo state in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10ey:
SK5B-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10ez:
SK3D-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10fd:
SK5G-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10fe:
OX1-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10ff:
SK5A-Matured glycine/glutamate in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10fl:
SK5G-Germline
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10fn:
SK5A-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10fo:
SK5B-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-72906:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

PDB-9yfu:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

EMDB-71132:
Consensus refinement of beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

EMDB-71133:
Focused refinement of beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

EMDB-73228:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode I
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73231:
Cryo-EM map of D614G spike, 1-up-RBD
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73244:
SARS-CoV-2 D614G spike, 3-RBD-downn
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73245:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, Subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73247:
Fab-14/SARS-CoV-2 D614G spike complex, Mode V conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73260:
Fab-14/SARS-CoV-2 D614G spike complex, Mode I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73263:
Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more