[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,053 items for (author: mori & t)

EMDB-59026:
Cryo-EM structure of SKM-M.smegmatis 70S ribosomal complex
Method: single particle / : Cook MA, Xu M, Morici M, Travin DT, Wang W, Klepacki D, Nandini N, Rao VN, Sahile H, Hackenberger D, Golas AJ, Nietupski RM, Fitzgerald M, Safdari HA, Berger M, Corazza M, Bond A, Ben-Zion I, Guitor AK, Tertigas D, Wang L, Schaenzer AJ, Ejim L, Yarlagadda V, Gomez J, Surette MG, Av-Gay Y, Dhar N, Hung DT, Vazquez Laslop N, Mankin A, Wilson DN, Wright GD

PDB-32nj:
Cryo-EM structure of SKM-M.smegmatis 70S ribosomal complex
Method: single particle / : Cook MA, Xu M, Morici M, Travin DT, Wang W, Klepacki D, Nandini N, Rao VN, Sahile H, Hackenberger D, Golas AJ, Nietupski RM, Fitzgerald M, Safdari HA, Berger M, Corazza M, Bond A, Ben-Zion I, Guitor AK, Tertigas D, Wang L, Schaenzer AJ, Ejim L, Yarlagadda V, Gomez J, Surette MG, Av-Gay Y, Dhar N, Hung DT, Vazquez Laslop N, Mankin A, Wilson DN, Wright GD

EMDB-71555:
Cryo-EM structure of full-length human TRPV1 in complex with analgesic MSP20
Method: single particle / : Neuberger A, Talyzina IA, Romeo I, Aiello F, Maramai S, Alcaro S, Artese A, Brizzi A, Sobolevsky AI

PDB-9pea:
Cryo-EM structure of full-length human TRPV1 in complex with analgesic MSP20
Method: single particle / : Neuberger A, Talyzina IA, Romeo I, Aiello F, Maramai S, Alcaro S, Artese A, Brizzi A, Sobolevsky AI

EMDB-58529:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-N-terminal monoclonal antibody
Method: single particle / : Lau RJ, Wu GHY, Barritt JD, Huemer CB, Matthews S

EMDB-58555:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

PDB-31mr:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

EMDB-66953:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with AMPPNP
Method: single particle / : Tanabe M, Taguchi A, Moriya T, Nishino K

PDB-9xka:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with AMPPNP
Method: single particle / : Tanabe M, Taguchi A, Moriya T, Nishino K

EMDB-64638:
H4-4KAc chromatosome Class 1
Method: single particle / : Furukawa A, Echigoya K, Wakamori M, Ohtomo H, Tsunaka Y, Umehara T, Takizawa Y, Kurumizaka H, Nishimura Y

EMDB-64639:
H4-4KAc chromatosome Class 2
Method: single particle / : Furukawa A, Echigoya K, Wakamori M, Ohtomo H, Tsunaka Y, Umehara T, Takizawa Y, Kurumizaka H, Nishimura Y

EMDB-53943:
Manikomycin bound to the Escherichia coli 50S ribosomal subunit
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

EMDB-54009:
Manikomycin bound to the Escherichia coli 70S ribosome
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

PDB-9rfw:
Manikomycin bound to the Escherichia coli 50S ribosomal subunit
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

PDB-9rja:
Manikomycin bound to the Escherichia coli 70S ribosome
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

EMDB-62834:
CryoEM structure of Arabidopsis thaliana D397N Rubisco with D4 symmetry
Method: single particle / : Yamori W, Nakazato I, Yuchen Q, Sanga Y, Miyata T, Uehara R, Noto Y, Namba K, Fukayama H, Matsumura H, Arimura S

PDB-9l5i:
CryoEM structure of Arabidopsis thaliana D397N Rubisco with D4 symmetry
Method: single particle / : Yamori W, Nakazato I, Yuchen Q, Sanga Y, Miyata T, Uehara R, Noto Y, Namba K, Fukayama H, Matsumura H, Arimura S

EMDB-62824:
CryoEM structure of Arabidopsis thaliana Col-0 Rubisco with D4 symmetry
Method: single particle / : Yamori W, Nakazato I, Yuchen Q, Sanga Y, Miyata T, Uehara R, Noto Y, Namba K, Fukayama H, Matsumura H, Arimura S

PDB-9l58:
CryoEM structure of Arabidopsis thaliana Col-0 Rubisco with D4 symmetry
Method: single particle / : Yamori W, Nakazato I, Yuchen Q, Sanga Y, Miyata T, Uehara R, Noto Y, Namba K, Fukayama H, Matsumura H, Arimura S

EMDB-62829:
CryoEM structure of Arabidopsis thaliana M309I Rubisco with D4 symmetry
Method: single particle / : Yamori W, Nakazato I, Yuchen Q, Sanga Y, Miyata T, Uehara R, Noto Y, Namba K, Fukayama H, Matsumura H, Arimura S

PDB-9l5d:
CryoEM structure of Arabidopsis thaliana M309I Rubisco with D4 symmetry
Method: single particle / : Yamori W, Nakazato I, Yuchen Q, Sanga Y, Miyata T, Uehara R, Noto Y, Namba K, Fukayama H, Matsumura H, Arimura S

EMDB-76875:
CryoEM structure of Papaya Meleira Virus (PMeV) particles purified directly from Carica papaya latex
Method: single particle / : de Oliveira G, Rodrigues S

EMDB-63767:
Cryo-EM structure of wild-type SaCas9-guide RNA-mismatched target DNA complex
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-63768:
Cryo-EM structure of eSaCas9-NNG-guide RNA-mismatched target DNA complex
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

PDB-9mb6:
Cryo-EM structure of wild-type SaCas9-guide RNA-mismatched target DNA complex
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

PDB-9mb7:
Cryo-EM structure of eSaCas9-NNG-guide RNA-mismatched target DNA complex
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-54401:
State 2 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to proximal upstream H3
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9rze:
State 2 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to proximal upstream H3
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-49462:
N1 neuraminidase of influenza A/Vietnam/1203/2004 H5N1 in complex with four FNI9 Fab molecules
Method: single particle / : Errico JM, Dang HV, Snell G

PDB-9nj2:
N1 neuraminidase of influenza A/Vietnam/1203/2004 H5N1 in complex with four FNI9 Fab molecules
Method: single particle / : Errico JM, Dang HV, Snell G

EMDB-55572:
Cryo-EM structure of ISCro4-DBL-TBL-tDNA-dDNA synaptic complex
Method: single particle / : Fernandez Carrera J, Pelea O, Gerecke SE, Chanez C, Jinek M

PDB-9t56:
Cryo-EM structure of ISCro4-DBL-TBL-tDNA-dDNA synaptic complex
Method: single particle / : Fernandez Carrera J, Pelea O, Gerecke SE, Chanez C, Jinek M

EMDB-53311:
Cryo-EM map of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53341:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-55145:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qqq:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qsj:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9sro:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-49892:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-49893:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

PDB-9nws:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

PDB-9nwt:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-56129:
Octameric C. elegans BORC, containing BORCS5, BORCS6, BORCS7, BORCS8, KXD1 and the shared BORC and BLoC-1 subunits, BLOC1S1, BLOC1S2 and Snapin
Method: single particle / : Amann SJ, de Araujo MEG, Grishkovskaya I, Huber LA, Haselbach D

PDB-9tqb:
Octameric C. elegans BORC, containing BORCS5, BORCS6, BORCS7, BORCS8, KXD1 and the shared BORC and BLoC-1 subunits, BLOC1S1, BLOC1S2 and Snapin
Method: single particle / : Amann SJ, de Araujo MEG, Grishkovskaya I, Huber LA, Haselbach D

EMDB-65385:
cryo-EM structure of gastric proton pump bound to YK01
Method: single particle / : Saito H, Abe K

PDB-9vvo:
cryo-EM structure of gastric proton pump bound to YK01
Method: single particle / : Saito H, Abe K

EMDB-67107:
Cryo-EM structure of the human A2A adenosine receptor in complex with a Fab antibody fragment
Method: single particle / : Miyashita Y, Konno R, Ogasawara S, Okuda Y, Takamuku Y, Moriya T, Saito T, Murata T, Ohara O, Kawashima Y

PDB-9xqb:
Cryo-EM structure of the human A2A adenosine receptor in complex with a Fab antibody fragment
Method: single particle / : Miyashita Y, Konno R, Ogasawara S, Okuda Y, Takamuku Y, Moriya T, Saito T, Murata T, Ohara O, Kawashima Y

EMDB-63347:
Straight and symmetrical filament of the spirochete periplasmic flagella of Leptospira biflexa
Method: helical / : Kawamoto A, Nakamura S, Koizumi N

EMDB-63348:
Core filament of the spirochete periplasmic flagella of Leptospira biflexa
Method: helical / : Kawamoto A, Nakamura S, Koizumi N

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more